Lab 11 Data Sheet
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ELTEEIEYT LA A B AR R AR RCECERRRERERRN LABORATORY 11: DATA SHEET Name:_Addana. Sondnez Lab Partner(s):_Savannan Date: 412212024 Exercise | (p.113) 1. Below is an alignment of a portion of the mtDNA genome from several humans and chimpanzees. The first human sequence is shown in full and the other sequences are compared to it. A dot indicates the place where the base pair of the sequence matches the first sequence (Human #1). The nucleotide is indicated where there is a mismatch when compared to the Human #1 sequence. A dash indicates a base pair is missing (a deletion) when compared to the Human #1 sequence. Human #1 1 CCCCCCCCAT GCTTACAAGC MGTACAGCA ATCAACCTTC AACTATCACA CATCAACTGC AACTCCAAAG CCACCCCTCA CCCACTAGGA TACCAACAAA 100 Chimp #1 Chimp #2 Chimp #3 Chimp #4 Chimp #5 a. Give the base pair number for a SNP marker that is fixed between human and chimps. IZ ‘ase pair b. Give the base pair number for a SNP marker that would be useful for studying population variation within humans. 4 base pair Give the base pair number for a SNP marker that would be useful for studying population variation within chimps. UT base pair Laboratory 117 Studying Evolutionary Genetics with Mitochondrial DNA 117
2. Using the alignment provided by your lab instructor, collect data about COXT DNA sequence divergence in the eukaryotes. Total length of COX7 gene segment: ___ 50 bp human | fruirfly | Hiopio | chirmp | mouse | Yeast human, e 1® g 5 (p |7 fuitflu | 0.30 - \S 19 13 1z Tilapia | 0.0 0. 20 - 10 7 P Chme | ©.l10 *| 0.3% | 0.20 - \0 17 Meust | 0.2 0.20 | 0.4 | 0.20 - 17 | least | o34 o.24 | 032 | ©0.32 | O.34 - 3. Create an UPGMA tree using the nucleotide sequence distances you calculated above. You are welcome to use the whiteboards to create a draft of your tree before filhngm your completed tree below. (0.30 40.33 2 0.2 0Lz +222:0.588 —— 0.003)| 00 Huma n 0.05 Chirmp 0 L ,.8‘ Mousc 0.18% 0.083 -“\q?\. a r 0. VQQS“ 4. Using the alignment provided by your lab instructor, collect data for COX1 protein sequence divergence in the eukaryotes. Total length of COX1 protein segment: 100 aa C0\3 rait Fly Homeo | FowFly | Tilopia | Chimp | Mouse Yeay: Hurmans T e 15 \ | L . 37 Futfy | Ous - 2\ Y 5 34 Topia | O\ - | 0.2 ) \Z <l 31 comp | o.01e| 0.4 | 0.2 - n 30 Mmouse | 0.0pe| 0.5 0.09 0.01' T 37 Yeast | 0.z | 0.34 | 0.31 | 0.30 | 0.37 - 118 studying Evolutionary Genetics with Mitochondrial DNA | Laboratory 11 ARARIRIRARARARL TRV \ \ AR RMEREREREEARRB annonananNannnar
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Numbering the fragments left by cutting the DNA with BAM HI from left
to right, which fragment will travel the furthest?
BAM HI:
GGATCC
CCTAGG
AATCGGATCCATTTGGACTAAAGGACCCGGATTGGATCCAGGGCCTTTAGTACC
TTAGCCTAGGTAAACCTGATTTCCTGGGCCTAACCTAGGTCCCGGAAATCATGG
O 3
O 2
4.
1.
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Genetics
Attached is a segment of DNA (doublestranded). Answer the following questions about the segment of DNA:
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pGGCGACCGATTAGTCCCATCGATGGG−OH
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Transposons are useful as mutagens because they act asmolecular tags for genomic DNA sequences that can beidentified rapidly by inverse _______
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EcoRI --- 5' G - AATTC 3'
5' AGAATTCCGACGTATTAGAATTCTTAT CCGCCGCCGGAATTCT CATCA 3'
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During nucleic acid hybridization, the probe is labelled
Question 1 options:
for DNA stability
to increase probe-test DNA binding
to identify the location of probe and the test DNA
binding
for amplification
Question 2
6.
9.
10
IV
13
14
Which of the following best describes the trait in the pedigree?
Question 2 options:
X-linked dominant
X-linked recessive
autosomal domiant
autosomal recessive
ON
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consider the DNA segment with a sequence: 3'-TACGGTACGGGATTG-5'. if the given DNA sample was subjected to ion-torrent sequencing, sketch the expected profile of the sequencing output. assume that the sequential flooding of nucleotides follows the order G-C-A-T.
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The following DNA sequences were used to generate a contig from a genome sequencing project.
ttcagattttccccg
gctaaagctccgaa
gccattaacgcc
tttagcatactacggcgtta
aaaaccggggaaaat
tccgaatcggtcattcaga
How long is the fully assembled contig?
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(a) Complete the table, using a letter D, R or B, to show whether each statement applies
to:
Fo
DNA only (D)
TA2G – Completed forms must be available for Open Awards external moderation purposes. Page 6 of 15
> T
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RNA only (R)
Both DNA and RNA (B)
Statement
D or R or B
Contains thymine
Contains ribose
Consists of two chains connected to each
other with hydrogen bonds
Has a sugar-phosphate backbone
Has four different nitrogenous bases
Contains a pentose sugar
Is found in the nucleus and cytoplasm
English (United Kingdom)
Focus
目民
2490 words
+1
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Ailee is interested to determine the nucleotide sequence of her bacterial heat shock gene.
Hence, DNA sequencing needs to be performed for this analysis. One of the earliest methods
invented is known as Sanger sequencing. Explain in detail the mechanism of this sequencing
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DNA
GAAGGGACAATACTTTCTTAACACTTG
MRNA
Amino Acid
Sequence
1. Which kind of protein molecule did this gene make?
2. How does this protein help the body maintain homeostasis?
Conclusion Questions:
1. Examine the protein you created. If the DNA strand that you started with had a change
in it (A changed to G), what would happen to the protein made?
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11:29
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Name
Class
Date
2. How are enzymes involved in this process?
3.
hаppens
anzips"?
4. Why is it important that exact copies of DNA be made?
5. Suppose that a sequence of one DNA strand is T-A-C-A-A-C-G-T-G. What is the
corresponding sequence on the other strand?
E Concept Mapping
The construction of and theory behind concept mapping are discussed on
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consider the concepts presented in Section 7-1 and how you would organize
them into a concept i
page 74. Notice that the concept map has been started for you. Add the key
Now look at the concept map for Chapter 7 on
concepts you
are important
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When you have
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A sample of DNA is collected from an organism. It is analyzed and determined that 20% of the DNA is made up of
the base adenine. Based on this information, which of the following correctly lists the amounts of the three.
remaining bases for this sample?
10% cytosine, 30% thymine, 40% guanine
O 20% cytosine, 20% thymine, 20% guanine
30% cytosine, 30% thymine, 20% guanine
30% cytosine, 20% thymine, 30% guanine
p. 5 of 31
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please asap
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There are numerous methods for sequencing DNA, including classical Sanger sequencing, automated Sanger sequencing, and
next-generation sequencing technologies, including Illumina technology.
Match the modified cytidine nucleotide triphosphates (NTPs) with DNA sequencing methods that utilize them.
Classical
Sanger sequencing
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HO-P=O
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Automated
Sanger sequencing
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CH3
H₂CN
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HOOOO
OH OH OH
NH
CH₂
Next-generation DNA
sequencing (Illumina)
CH₂
NH₂
Answer Bank
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5'-AACGCATGAGAAAGCCCCCCGGAAGATCACCTTCCGGGGGCTTTATATAATTAGC-3'
3'-TTGCGTACTCTTTCGGGGGGCCTTCTAGTGGAAGGCCCCCGAAATATATTAATCG-5'
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Subject :- Chemistry
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T
•C
A
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5-ТАТAСТТАСGAAGT-3'
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5'-TGAAGCATTCATAT–3'
5-АСТТCGTAAGTATA-3'
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Sequence 1: ATGCGATGCTAGCAT
Sequence 2: ATGCGATGATAGCAT
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the function of protein 1? Use the table below for assistance.
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C
A
G
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UUC
UUA
UUG
CUU
CUC
CUA
CUG
U
Phe
GUUT
GUC
GUA
GUG
Leu
Leu
AUU
AUC lle
AUA
AUG
Met or
Start
Val
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UCU
UCC
UCA
UCG
CCU
CCC
CCA
CCG
ACU
ACC
ACA
ACG
C
GCU
GCC
GCA
GCG
Ser
Pro
Thr
Ala
CAU
CAC
CAA
CAG
A
AAU
AAC
AAA
AAG
UAU
U
UAC
C
UAA Stop
UGA Stop A
UAG Stop UGG Trp G
Tyr
GAA
GAG
His
Gin
Asn
Lys
GAU
GAC Asp
G
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Glu
UGU
UGC
CGU
CGC
CGA
CGG
AGU
AGC
AGA
AGG
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GGC
GGA
GGG
Cys
Arg
Ser
Arg
Gly
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C
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G
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A) Protein 1 and protein 2 will function exactly the same.
B) Protein 1 will be shorter than protein 2, so they will not function the same.
C) Protein 2 will be shorter than protein 1, so they will not function the same.
D) Protein 2 has a different sequence, so it will function…
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