Lab 13 Biochem Part 1

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Rio Hondo College *

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Chemistry

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Feb 20, 2024

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BIOCHEMICAL REACTIONS : Part 1 Carbohydrate fermentation Nitrate reduction Gelatin hydrolysis OBJECTIVES: Students should be able to 1. explain the biological basis of each biochemical reaction 2. learn how to perform each biochemical test and interpret the test reaction 3 . understand how each test might be used in the identification of a species INTRODUCTION Bacteria are among the most diverse organisms with respect to the types of enzymes they contain, and the distribution of these activities can be used in distinguishing one organism from another. You will be using some of the more common biochemical tests here and will be introduced to others later in the semester. These tests may prove useful in the identification of your unknown. A variety of media are designed to facilitate determining these biochemical reactions of bacteria. ACTIVITY 1: CARBOHYDRATE FERMENTATION REACTIONS Many bacteria utilize a variety of carbohydrates as a source of energy (ATP) and some can use these carbohydrates through more than one pathway. Strict aerobes oxidize sugars to carbon dioxide and water through the process of aerobic respiration , using an electron transport system and molecular oxygen as the final electron acceptor. Facultative anaerobes and many strict anaerobes perform fermentation reactions. No electron transport system is used in fermentation and oxygen is not involved. Instead, they oxidize sugars to organic intermediates that act as the final electron acceptor and in the process create organic compounds (acids, alcohols, aldehydes) that are the end products of the reaction. Fermentation is not as efficient an energy-yielding process as aerobic respiration. Facultative anaerobes possess the enzymes that allow them to perform either respiration or fermentation depending upon the availability of oxygen. The compounds that an organism can break down through fermentation and the end products they produce are genetically determined. Among the end products commonly generated by fermentation are organic acids and gases such as CO 2 . PHENOL RED CHO BROTH To determine whether an organism can use a specific sugar for fermentation, the test medium contains:
1) a single sugar that may be used for energy production, 2) non-fermentable sources of nitrogen and other nutritional requirements , 3) a pH indicator phenol red ( color < pH 6.8 = yellow; pH 6.8 7.4 = red pH >7.4 = pink/magenta) 4) a Durham tube (an inverted vial) that collects any gas products. Base medium: The specific sugar tested is added to the medium. Pancreatic Digest of Casein 10.0gm Sodium Chloride 5.0gm Phenol Red 18.0mg Final pH 7.4 +/- 0.2 at 25ºC. Growth is determined by turbidity. A positive fermentation reaction is indicated by a change in the color of the phenol red dye from red to yellow, indicating a drop in pH below pH 6.8 due to the production of acid end products. An intense pink color indicates the inability to ferment that carbohydrate and the creation of an alkaline environment from ammonia produced from degradation of proteins in the medium. Gas production, if observed by a bubble within the Durham tube, is also recorded. Un- inoculated controls must be run to accurately evaluate results. MATERIALS Fermentation broths glucose, sucrose, lactose 3 of each for a total of 9 tubes Escherichia coli, Pseudomonas aeruginosa, Staphylococcus aureus in broth
METHODS 1. Inoculate a loopful of each organism into each type of broth. 2. Incubate for 24 - 48 hours at 37°C. RESULTS glucose/lactose/sucrose Examine the tubes for growth (+), acid (A) and gas production (G) and compare to a control uninoculated tube. Record your results. In describing the reactions of bacteria fermenting a carbohydrate, microbiologists use a shorthand to indicate the result: Yellow = acid production; indicated by “A” Pink = alkaline production; indicated by “K” Red = no reaction; no change in pH Bubble in the Durham vial = gas (CO 2 ) production indicted by a + Compare the fermentation results for these organisms by indicating the color of the tube and whether there is any bubble in the Durham vial by completing the table using the shorthand from above. Organism Glucose Sucrose Lactose E. coli Yellow; A+ Ps. aeruginosa S. aureus DISCUSSION QUESTIONS 1. What does the yellow color indicate? 2. What is the gas that is collected in the Durham vial? 3. Pr. mirabilis can ferment glucose producing gas but is negative for both lactose and sucrose. What would the tubes for Pr. mirabilis look like? 4. Sucrose is a disaccharide composed of glucose and fructose. Explain why some organisms that can ferment glucose cannot ferment sucrose. 5. Would you expect a microbe that ferments lactose to also ferment glucose? Why? 6. What does an intense pink color indicate? How does this occur?
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