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Dnaa Synthesis Essay

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Nonetheless we observed two distinct features connected with the core consensus sequence of Epsilonproteobacterial DnaA boxes and DnaA-DnaA box interactions: strict conservation of thymine at the 5th position and the binding of Epsilonproteobacterial DnaA to guanine G4 of a DnaA box. So far the 5th positions of the E. coli consensus DnaA box (TTWTNCACA) and the M. tuberculosis DnaA box (YWRTCCACA) were considered to be variable without influencing affinity towards cognate DnaAs (Fujikawa et al., 2003; Schaper and Messer, 1995; Tsodikov and Biswas, 2011). However, it should be noted that in both species, the 5th position of DnaA box is preferentially occupied by the C residue. All other bases of the sequence, either of the upper or the lower strand, interact with DnaA, and any deviation from the most stringent TTATNCACA consensus sequence results in reduced DnaA affinity towards the less perfect boxes. …show more content…

The other nucleotides within a core sequence are also highly conserved. The 8th position is occupied by a C residue, with the sole exception of the H. pylori ts1 DnaA box, in which C at the 8th position is substituted with A. The ts1 and ts2 DnaA boxes constitute a double DnaA box, which might require special sequence adjustment for proper and/or efficient DnaA binding. In addition, the ts1 DnaA box is bound with lower affinity than the ts2 box (Donczew et al., 2014), indicating that substitution at this position of a DnaA box negatively affects DnaA binding. Relatively rare C to A and vice versa substitutions at 6th and 7th positions, respectively, are tolerated. Other substitutions are not

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