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Prostate Cancer Essay

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Prostate cancer originates in the secretory epithelial compartment of the prostate. The major function of these cells is to secrete protein components of prostatic fluid such as MSMB. With progression to metastasis, cells proliferate faster and lose their differentiated secretory phenotype. Expression of the mRNA of tumor suppressors and many cytoskeletal proteins decline. On the other hand, expression of genes associated with cell cycle [cyclins and cyclin dependent kinases] and protection from apoptosis [BIRC5] increase. As tumors grow, they become hypoxic due to characteristics of the tumor specific blood supply.
Ensembl
• Go to Ensembl: http://www.ensembl.org/
• Choose Human from All genomes
• Input ERG into search window.
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adj.P.Val P-value after adjustment for multiple testing. This column is generally recommended as the primary statistic by which to interpret results. Genes with the smallest P-values will be the most reliable.
P.Value Raw P-value t Moderated t-statistic (only available when two groups of Samples are defined)
B B-statistic or log-odds that the gene is differentially expressed (only available when two groups of Samples are defined) logFC Log2-fold change between two experimental conditions (only available when two groups of Samples are defined)
F Moderated F-statistic combines the t-statistics for all the pair-wise comparisons into an overall test of significance for that gene (only available when more than two groups of Samples are defined)

6. In the list of genes determine whether pro-survival and pro-metastatic BIRC5 mRNA is overexpressed or underexpressed? Identify several mitotic proteins that are overexpressed.

BIRC5 (baculoviral IAP repeat containing 5) had one FC value = 0.837314. This positive FC value indicates that the mRNA is upregulated and its expression was increased by ~0.8.

BIRC5 (baculoviral IAP repeat containing 5) also had one FC value = 3.769565. This positive FC value indicates that the mRNA is upregulated and its expression increased by ~3.8.

Mitotic proteins that we found to be overexpressed were BUB1, BUB1B, BUB3, MAD1L1 and MAD2L2. BUB1B is a mitotic spindle checkpoint protein using serine and threonine kinase B. BUB3 is

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