to which nucleotides might you design your guide RNA? Why? d) RNA Seq is used to determine off-target effects of Cas9 cleavage. Why is this an appropriate tool to determine these effects? e) Data on the following page is RNA-Seq data about indels that were detected away from the target site. What does this show about the effectiveness of CRISPR? Please also comment about the impact of these off-targets impacts on the utility of CRISPR in human medicine. ATACAAAGGAT CAGAAT CC CNG G . On-target chr465163142 T C FF chr1:199581904 chr22:47094773 chr487529947 chr9:109570965 chr7:132754767 chr2203801137 chrX:155356680 chrX:155484568 chr22:45689924 chr3:107039143 chr9:122015027 chr7:147113997 chrX:12851965 chrX:102677950 chr560703887 chr5:12506322 chr4:116565656 chr10:10467604 TC chrX:144268686 chr7:146700912 CA chr2:30757626 chr2:13854278 chr15:73766400 chrX:13727578 chr7:143114275 chr2:14708587 chr823569322 chr2216830092 chr20:17814888 T- chr8:135042874 C. TA. T . . ........... <.........ooooo.. C C ............ G G T с ....... G G G сст сст ···········.o. ... TT G C TC ..........000. G TC . ......... ...A CT ....

Human Anatomy & Physiology (11th Edition)
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ISBN:9780134580999
Author:Elaine N. Marieb, Katja N. Hoehn
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Chapter1: The Human Body: An Orientation
Section: Chapter Questions
Problem 1RQ: The correct sequence of levels forming the structural hierarchy is A. (a) organ, organ system,...
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to which nucleotides might you design your guide RNA? Why?
d) RNA Seq is used to determine off-target effects of Cas9 cleavage. Why is this
an appropriate tool to determine these effects?
e)
Data on the following page is RNA-Seq data about indels that were detected
away from the target site. What does this show about the effectiveness of
CRISPR? Please also comment about the impact of these off-targets
impacts on the utility of CRISPR in human medicine.
ATACAAAGGAT CAGAAT CC CNG G
.
On-target
chr465163142 T C
FF
chr1:199581904
chr22:47094773
chr487529947
chr9:109570965
chr7:132754767
chr2203801137
chrX:155356680
chrX:155484568
chr22:45689924
chr3:107039143
chr9:122015027
chr7:147113997
chrX:12851965
chrX:102677950
chr560703887
chr5:12506322
chr4:116565656
chr10:10467604 TC
chrX:144268686
chr7:146700912 CA
chr2:30757626
chr2:13854278
chr15:73766400
chrX:13727578
chr7:143114275
chr2:14708587
chr823569322
chr2216830092
chr20:17814888 T-
chr8:135042874 C.
TA. T
.
.
...........
<.........ooooo..
C
C
............ G
G
T
с
.......
G G
G
сст
сст
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TT
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..........000. G
TC
.
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CT
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<.
.
.
.
.
.
.
.
...oo.
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C
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C
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<......
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Reads
1130
621
603
406
325
320
311
149
139
139
105
103
103
85
60
53
51
49
49
47
45
44
43
42
36
35
30
27
25
18
14
13
Transcribed Image Text:to which nucleotides might you design your guide RNA? Why? d) RNA Seq is used to determine off-target effects of Cas9 cleavage. Why is this an appropriate tool to determine these effects? e) Data on the following page is RNA-Seq data about indels that were detected away from the target site. What does this show about the effectiveness of CRISPR? Please also comment about the impact of these off-targets impacts on the utility of CRISPR in human medicine. ATACAAAGGAT CAGAAT CC CNG G . On-target chr465163142 T C FF chr1:199581904 chr22:47094773 chr487529947 chr9:109570965 chr7:132754767 chr2203801137 chrX:155356680 chrX:155484568 chr22:45689924 chr3:107039143 chr9:122015027 chr7:147113997 chrX:12851965 chrX:102677950 chr560703887 chr5:12506322 chr4:116565656 chr10:10467604 TC chrX:144268686 chr7:146700912 CA chr2:30757626 chr2:13854278 chr15:73766400 chrX:13727578 chr7:143114275 chr2:14708587 chr823569322 chr2216830092 chr20:17814888 T- chr8:135042874 C. TA. T . . ........... <.........ooooo.. C C ............ G G T с ....... G G G сст сст ···········.o. ... TT G C TC ..........000. G TC . ......... ...A CT .... <H CAT CA FFFFFO <. . . . . . . . ...oo. DADO 000.00 C с C с <...... T. Reads 1130 621 603 406 325 320 311 149 139 139 105 103 103 85 60 53 51 49 49 47 45 44 43 42 36 35 30 27 25 18 14 13
Question #3: CRISPR has been used to cure an individual from sickle cell. Below is a Sanger
electropherogram of a sequence from a patient without sickle cell and one with sickle cell.
Sequence from a normal individual
mmmm
Sequence from the diseased individual
G T GIIC A
GC A
Se
SCIENCEphe
A
G A
SCIENCE
SCIENCEphoto
G
a) Where is the change in the sequence and what is the consequence to the
protein sequence of this mutation?
b) Below is an image of the normal and diseased quaternary hemoglobin
protein. What is different about the protein shape and why does that
structure have a huge impact on its function (please name the function!)?
Adult haemogBRAR
G G
G G
A
G
Sickle Cell haemoglobin S
Structure a s
RARY
COLIBRARY
c) If you were to use CRISPR to modify the genome of a diseased individual,
to which nucleotides might you design your guide RNA? Why?
d) RNA Seq is used to determine off-target effects of Cas9 cleavage. Why is this
an appropriate tool to determine these effects?
e) Data on the following page is RNA-Seq data about indels that were detected
away from the target site. What does this show about the effectiveness of
CRISPR? Please also comment about the impact of these off-targets
impacts on the utility of CRISPR in human medicine.
Transcribed Image Text:Question #3: CRISPR has been used to cure an individual from sickle cell. Below is a Sanger electropherogram of a sequence from a patient without sickle cell and one with sickle cell. Sequence from a normal individual mmmm Sequence from the diseased individual G T GIIC A GC A Se SCIENCEphe A G A SCIENCE SCIENCEphoto G a) Where is the change in the sequence and what is the consequence to the protein sequence of this mutation? b) Below is an image of the normal and diseased quaternary hemoglobin protein. What is different about the protein shape and why does that structure have a huge impact on its function (please name the function!)? Adult haemogBRAR G G G G A G Sickle Cell haemoglobin S Structure a s RARY COLIBRARY c) If you were to use CRISPR to modify the genome of a diseased individual, to which nucleotides might you design your guide RNA? Why? d) RNA Seq is used to determine off-target effects of Cas9 cleavage. Why is this an appropriate tool to determine these effects? e) Data on the following page is RNA-Seq data about indels that were detected away from the target site. What does this show about the effectiveness of CRISPR? Please also comment about the impact of these off-targets impacts on the utility of CRISPR in human medicine.
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