2. You are excited because you discovered a DNA sequence motif that appears to be in the promoters of very highly expressed genes. You suspect that it is the binding site for a transcription factor (TF). The problem is, that you can't identify the TF! The motif you found is: A-A-T-C-G-C/G-A/T-A/T-C/G-A/T where 'X' is any nucleotide and '/' denotes either of the two nucleotides. a) You give up trying to identify the TF and decide that you are going to engineer your own TF. How might you go about synthetically creating a novel TF that best targets this sequence? What considerations would you need to take into account here? b) How might you go about confirming that this sequence is indeed important for gene expression?

Biology: The Dynamic Science (MindTap Course List)
4th Edition
ISBN:9781305389892
Author:Peter J. Russell, Paul E. Hertz, Beverly McMillan
Publisher:Peter J. Russell, Paul E. Hertz, Beverly McMillan
Chapter16: Regulation Of Gene Expression
Section: Chapter Questions
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2. You are excited because you discovered a DNA sequence motif that appears to be
in the promoters of very highly expressed genes. You suspect that it is the binding
site for a transcription factor (TF). The problem is, that you can't identify the TF!
The motif you found is: A-A-T-C-G-C/G-A/T-A/T-C/G-A/T
where 'X' is any nucleotide and '/' denotes either of the two nucleotides.
a) You give up trying to identify the TF and decide that you are going to engineer
your own TF. How might you go about synthetically creating a novel TF that
best targets this sequence? What considerations would you need to take into
account here?
b) How might you go about confirming that this sequence is indeed important for
gene expression?
Transcribed Image Text:2. You are excited because you discovered a DNA sequence motif that appears to be in the promoters of very highly expressed genes. You suspect that it is the binding site for a transcription factor (TF). The problem is, that you can't identify the TF! The motif you found is: A-A-T-C-G-C/G-A/T-A/T-C/G-A/T where 'X' is any nucleotide and '/' denotes either of the two nucleotides. a) You give up trying to identify the TF and decide that you are going to engineer your own TF. How might you go about synthetically creating a novel TF that best targets this sequence? What considerations would you need to take into account here? b) How might you go about confirming that this sequence is indeed important for gene expression?
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