E1(0) E2(0) E3(0) 11(1) 12(1) B 11(g) 12(g) D El(g) E2() E3(g) No treatment FGF Cort EP Clone A B C D

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Author:Eldra Solomon, Charles Martin, Diana W. Martin, Linda R. Berg
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Chapter41: Neural Signaling
Section: Chapter Questions
Problem 11TYU
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You wish to find the cis-acting regulatory DNA elements responsible for the transcriptional responses of
two genes, c-fos and globin. Transcription of the c-fos
gene is activated in response to fibroblast growth factor
(FGF), but it is inhibited by cortisol (Cort). On the other hand, transcription of the globin gene is not affected
by either FGF or cortisol, but it is stimulated by the
hormone erythropoietin (EP). To find the cis-acting
regulatory DNA elements responsible for these transcriptional responses, you use the following clones of
the c-fos and globin genes, as well as two “hybrid” combinations (fusion genes), as shown in the diagram below. The letter A represents the intact c-fos gene, D
represents the intact globin gene, and B and C represent the c-fos–globin gene fusions. The c-fos and globin
exons (E) and introns (I) are numbered. For example,
E3(f) is the third exon of the c-fos gene and I2(g) is the
second intron of the globin gene. (These labels are provided to help you make your answer clear.) The transcription start sites (black arrows) and polyadenylation
sites (red arrows) are indicatedYou introduce all four of these clones simultaneously into
tissue-culture cells and then stimulate individual aliquots
of these cells with one of the three factors. Gel analysis of
the RNA isolated from the cells gives the following resultsThe levels of transcripts produced from the introduced
genes in response to various treatments are shown; the
intensity of these bands is proportional to the amount of
transcript made from a particular clone. (The failure of a
band to appear indicates that the level of transcript is
undetectable.)
a. Where is the DNA element that permits activation
by FGF?
b. Where is the DNA element that permits repression
by Cort?
c. Where is the DNA element that permits induction by
EP? Explain your answer.

E1(0)
E2(0)
E3(0)
11(1)
12(1)
B
11(g)
12(g)
D
El(g)
E2()
E3(g)
Transcribed Image Text:E1(0) E2(0) E3(0) 11(1) 12(1) B 11(g) 12(g) D El(g) E2() E3(g)
No
treatment
FGF
Cort
EP
Clone
A
B
C
D
Transcribed Image Text:No treatment FGF Cort EP Clone A B C D
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