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Diversification In Chameleons

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Quantifying diversification dynamics in Chameleons

The objective of this research is to investigate diversification rate shifts to see if there was a higher speciation rate in chameleons once they dispersed from Africa to Madagascar. My phylogenetic tree was built from 6-genes, multiple nuclear and mitochondrial markers and 174 taxa, it represents over eighty-three percent chameleon species. Using three different reconstruction methods, Bayesian and likelihood approaches it was seen that the family originated in Africa, with two separate oceanic dispersals to Madagascar. I will be using BAMM software to test diversification rates to see if there was colonization from Africa to Madagascar. There are three Malagasy genera found on the phylogeny …show more content…

The table from figure 1, shows the rate shifts from a scale of zero to five, strong evidence suggests there is a high probability in the rate shift at model one, producing a result of 48%, this shows that there is a significant shift in the branch of the phylogenetic tree. The second table in figure2, compares different shifts of models from the post file and prior file using the Bayes factor. The table shows a slight support for model one when compared to model zero since it has a Bayes factor of 2.35. (Might have mixed this up, ask dr blair). When checking the effective sampling size of the log-likelihood and the number of shifts present, strong evidence suggest, the higher the sampling size, the more confident we are when working with our parameters. The effective size for the number of shifts is 2326.543 and the effective size for the log-likelihood is 2605.621, this is shown in figure 4. The BAMM analyses were run for 20,000000 generations with four chains, sampling a sequence of every 4000 generations and a burn of ten percent. From the phylogenetic tree, it can be seen that there was a higher speciation rate in the past, this can be identified because of the warmer color on the branches of the clade. Speciation rate gets lower as we come closer to the present time, which results in a colder color, blue. When looking at the phylogenetic tree above, it shows a great significance for adaptive radiation. This is where one species, due to the change in the environment quickly evolve, this occurs when a species is dislocated to a different location and has to quickly adapt. From the tree, rapid speciation can be seen on a branch closest to 90 Myr, but as speciation continues towards present time, it declines. It could be the new geographical location is not the same ecological set up as the previous location, hence only the fittest species survive. The diversification rate declines over time due

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