Question 3
Based on the phenotypic effects observed with either mutant alleles (forward genetic screen) or knockdown effects (e.g. RNAi or morpholino), you determine that you would like to generate a conditional knockout animal (in this case, in a mouse model).
(3A) What is the procedure to generate a conditional knockout mouse and how would you use it?
1.Create targeting construct using recombinant DNA technology. The construct must contain the transgene DNA sequence and the promoter necessary for gene expression. The taransgene has to be flanked by long segments of DNA homologous to endogenous mouse genome. The targeting construct must also contain positive selection gene between the homology arms and a negative selection gene outside of the homology arms.
To create a conditional KO mouse carrying a null gene identified in answer A, I would use a Cre/lox binary expression system. I would have to generate two mouse lines, TH-Cre mouse and mouse with a floxed gene (same orientation) of interest, and then cross these mice to produce a mouse which has a knock out of gene identified in answer A in DA neurons only (Cre expressing neurons).
I could also generate an additional KO animal in which Cre expression is limited to E11.5-E18 by injection of tamoxifen in Cre-ER fusion paradigm to investigate the effect of gene knock out during the time frame in which DA projections develop (although, tamoxifen exposure of the fetus might affect other developmental processes).
2.
Rudolph Jaenisch bred the first genetically modified mouse in 1974. Today, millions of mice are used in genetic modification experiments. (Genetic Modified Mice) Rudolph showed that foreign DNA could be integrated into the DNA of early mouse embryos. Despite the success of the transgenic mouse, their results in mice may not breed the same for humans. The mouse is small, making it an economical choice, and it also breeds very well. Therefore, mice were disposable. Scientists can use mice without hesitation because there is
Loss of function experiments, such as in a gene knockout experiment, in which an organism is engineered to lack the activity of one or more genes, resulted in gene product to have less or no function. It is very commonly used in the research, and it can reduce or abolish protein function.
The creation of a transgenic animal in this case a mouse can be divided in four crucial steps. First the development of the transgenic construct, second its preparation for integration with the pronucleus of fertilized mouse embryo, third screening and identification of transgenic founder mice and last successful breeding of founder
RNAi knockdown: RNA complementarity to the SHANK3 mRNA contained in 5 ml of stock solution was injected into the cerebellum of the knockout, early SHANK3, and late SHANK3 groups. Injections were performed every 5 days in order to maintain the knockdown. The knockout group received these injections from birth throughout the duration of the experiment. The early SHANK3 group were injected from birth until day 14. The late SHANK3 group were injected from birth until day 90. The control group received saline injections every 5 days.
Both genetic and environmental factors affect your phenotype. Traits that are primarily attributed to genetics are height, weight, eye color, hair color, and hair texture. All traits are influenced by the environment to some extent. While genetics are primarily responsible for what you will look like, the environment definitely has some impact on your phenotype as well.
The two implications for gene knockdown I will be discussing are the Survival of population and the health or survival of individual. The survival of the population is affected if the calves die or becomes unhealthy without the BLG protein present in the cow’s milk. This will have a major effect on the survival of the cattle population. This is because if the majority of the calves being born are unable to survive without the BLG protein this means that rest of the calves cannot survive as well, as they are all genetically identical. Hence the population number will decrease significantly.
Genetic engineering is direct manipulation of an organism’s genetic makeup by transferring certain traits or genes from one organism to another. It can be used to learn more about the disease, detect earlier, or treat disease. One way genetic engineering is being used is by introducing a gene mutation into mice to reproduce the same pathological mechanisms that is found in humans. Scientists focused their efforts towards creating a mutation- targeted treatment, and to decrease or prevent the production of
To make it easier to study certain diseases, transgenic animals have been developed to have a particular gene that
Your research team wants to evaluate the efficacy of non-hodgkin lymphoma immunotherapy in vivo. Which mouse models would be your choice (GEMMs or Xenografts)? Explain.
mutagenesis kit. The forward primer, 5-GACCGCTGATGCCAGTCGTGTTGCAAAAATTG-3 and reverse primer, 5-CAATTTTTGCAACACGACTGGCATCAGCGGTC-3; for the G93R mutation. The mutated fragment was then recombineered back into the pBAC5. Therefore, the finalised construct was cleaved with I-Scel meganuclease and injected into zebrafish embryos at zygote
They also used a western blot test from crude extracts of the phenotypes to test out the effectiveness of the system, they found that in the reverted flox/flox had the same amount of that of +/+. -/- and geo/geo bot mice both died after 3-4 weeks of birth and the flox/flox were observed to be as healthy as the +/+ and through this -/- and geo/geo were known as the mutants (Sato, 2007). The apical proteins were found to be mislocalized to lysosomes and then degraded in the Rab8 knockout mice, this led to malnutrition as there was poor absorption and digestion of the milk and ultimately killing the mice from starvation. This was found through an experiment determining whether abnormalities in the small intestine were the major cause of death by breeding Flox/+ mice with transgenic mice that express Cre recombinase under the Villin promoter. It was observed that all mouse that expressed one floxed allele died at the same time as the mutant mouse whereas mice with two floxed alleles were healthy but died after 12 weeks of birth due to reduced efficiency of Rab8 (Sato, 2007). The healthy two floxed allele mouse showed a mosaic expression of Rab8, the Rab8 negative cells had large sub-apical vacuoles like the knockout mouse however in the Rab8 positive cells there weren’t any vacuoles. The first experiment is different to other experiment; the first experiment was trying to see what happened
The ccdB gene (see below) for negative selection (present in donor, destination, and supercoiled entry vectors)
If our experiment is a success, the mice will display the WT phenotype. However, if the SMN1 gene editing has not been successful, the mice will display an SMA phenotype as depicted below.
This is then introduced into the human body commonly by injection where it will target cells nuclei inserting its genetic material which contains the functioning ADA gene meaning that a large number of somatic cells will be able to produce the functioning ADA protein can be synthesised. It is worth noting that while gene therapy has been done successfully on patients with ADA deficiency before, the treatment explained above is not the only method and will not work for every patient. After the recombinant DNA has been amplified the desired amount, it must first be injected into adenoviruses which will be the viral vectors responsible for delivering the functioning gene into the human body. After the DNA has been inserted into the adenoviruses these are placed into a solution which is then
There are two approaches or types of artificial selection or selective breeding, The first is "the approach of the breeder" in which the traditional breeder or experimenter applies "a known quantity of the selection to a single phenotypic trait, by examining the chosen character and choosing