Genomic DNA was extracted from the fungal mat of Sclerotium rolfsii. Thirty mg of freeze-dried mycelium was ground to a fine powder in an Eppendorf tube in liquid nitrogen. The ground mycelium was resuspended and lysed in 500 µl of lysis buffer (40 mM Tris-acetate, 20 mM sodium acetate,1 mM EDTA, 1% w/v SDS pH 8) (Lerner and Model1981). RNase A (2 µl of 10 mg/ml; Sigma USA) was added and the mixture was incubated for 5 min at 37 °C. To facilitate the precipitation of most polysaccharides, protein and cell debris, 165 ml of 5 mol/l NaCl solution was added and the components mixed by inverting the tube several times. The suspension was centrifuged at 6700 x g for 20 min at 4 °C, the supernatant was immediately transferred to a fresh tube and
The research question of the article Designer DNA by Rachel Berkowitz was how the deoxyribonucleic acid (DNA) portrays a unique sequence of protein for every organism. Biologically, all animals including humans have a unique DNA. The study focuses on how the arrangement of four nucleotide bases determines the DNA sequence. For decades, scientists have altered the DNA of various organisms to manipulate the life of living things. They have inserted genes into algae, yeast cells, and bacteria to produce enzymes that appear in different shapes and structures. The researchers hypothesized that software makes it less tedious for scientists to predict the behaviors of host organisms whose DNA have been manipulated. In reality, the actions
For years, scientists believed DNA, deoxyribonucleic acid, was the end-all-be-all: a mould for our cells to be created from. Which does not sound far-fetched since DNA contains all of the information needed for replication, differentiation, growth, and development, in addition to the countless cellular fates, as described in Waddington’s landscape. Instead, DNA is a guide for our cells, and Epigenetics is the tool that coerces them into their final cellular form. The Epigenetics Revolution: How Modern Biology Is Rewriting Our Understanding of Genetics, Disease, and Inheritance written by Nessa Carey, outlines the process of DNA versus Epigenetics, and the developments they have had within the scientific field. This paper will examine the fundamental distinction constructed by Nessa Carey between DNA as a script versus a template. This analogy of DNA as a script.
In the article “Almost-Earth Tantalizes Astronomers With Promise of Worlds to Come” scientists discover a planet known as Keplar-186 which could possibly have life. The Keplar-186 is the closest planet to Earth that could have life, but the planet is 500 light years away and has a red dwarf star as its sun. Whereas the article “‘Without Doubt,’ a Sixth Mass Extinction Event is Here” explains of how another mass extinction is likely to occur. The article further explains how if present conditions continue then it will take millions of years to recover life. Although, not all researchers are focusing on ecological or exobiological studies. In the article “Synthetic biology: edging toward the clinic” explores the ideas of how humans can manipulate cells in a rational fashion to cure diseases. Also, the article also explains of the difficulties with However,
Long dsRNA s bind to Dicer to cut into smaller nucleotide fragments/segments. siRNA unwinds when it is catalysed by Argonaut. One strand remained with the Argonaut is the guide strand. The RNA guide strand with Argonaut and other proteins are combined into RNA induced silencing complex (RISC) and the other passenger RNA strand is released into nucleotides.
The matched mycelia undergo plasmogamy but their nuclei remain unfused, a dikaryotic state, for most of the fungal life. As the fungus develops, and goes through karyogamy, it will eventually produce haploid spores from the spore-producing basidia. Below, the general basidiocota lifecycle chart from the class textbook has been modified to show a conk fruiting body and a poroid hymenium in place of the mushroom fruiting
Genetics has been increasingly studied in recent years in order to further understand the relationship between genes and many disorders. The field of genetics may interest speech-language pathologists since research has made progress in discovering genetic predispositions to certain speech or language impairments. Understanding the etiology of speech-language impairments can lead to the development of proper diagnoses and treatment of certain disorders, as well help individuals or families prepare for the possibility that a speech-language impairment may arise.
The process of making a RNA copy of a gene sequence is called transcription. The copy which is called mRNA (messenger) molecule exits the cell nucleus and goes inside of the cytoplasm. Once inside the cytoplasm the cell nucleus guides the synthesis of the protein. This is when it is encoded. The process of when the sequence of a messenger RNA (mRNA) is translated the molecule of the classification of the mRNA in groups of 3 bases which is used to accumulate the protein. DNA encodes the information to make RNA and RNA molecules works together to make protein. Basically transcription is another way to rewrite DNA into RNA. Translation is when we decode RNA into protein. The three steps of translation are initiation, elongation, termination.
The effects that ALS (Amyotrophic Lateral Sclerosis) has on the human body at the cellular level are trademarks of the disease and can be attributed in a large part to genetic mutations causing these phenotypes. ALS is autosomal dominant, meaning that if one parent has a gene that causes ALS, there is a 50% chance that one of their offspring may also have one of the genes that causes ALS. Men are slightly more likely to get ALS at a younger age than women are at a younger age but this gap begins to dwindle as the ages of people with ALS increases. Despite the fact that many genes have been discovered that cause ALS, a large portion of genes and mutations have yet to be found. The two groups of ALS, familial and sporadic, both have genetics
A Biobrick is a specific sequence that is inserted into a plasmid. The Biobrick’s restriction enzymes are standardized and are the same set of restrictions enzymes, so the parts can be easily ligated together. There are 2 conserved elements in promoters -35 and -10 sequence. Bacterial polymerases require a sigma factor to bind to promoter sequence, and variations in these sequences as well as in the spacing between them affect how well the sigma factor binds, leading to different promoter strengths.
The best known function of mitochondria is the generation of ATP from food sources. Pyruvate, converted from glucose, is consumed by mitochondria to produce ATP. As mitochondria produce ATP, they release reactive oxygen species (ROS) locally that must be detoxified as they can induce oxidative damage to mitochondrial DNA (mtDNA). This damage results in mutations and deletions of mtDNA. The relative absence of repair enzymes for mtDNA may explain its sensitivity to oxidative stress-induced damage [8]. The 10- to 20-fold higher mutation rate in mitochondrial DNA compared with nuclear DNA is believed to be due to its proximity to ROS generation and the limited DNA repair capacity [9, 10]. As the organism, tissue, and cells age, exposure of the
Synthetic biology is an interdisciplinary branch of biology and engineering that incorporates the design and development of new biological elements, equipment, and systems, as well as the re-design of existing natural biological systems for useful functions. It is a practice that guarantees improved drugs, better hydrated crops, greener fuels and even a potentially modernized or reconstructed chemical industry. Synthetic biology also has the potential to reduce our dependence on oil and address climate change (Waxman, “ Synthetic biology can help fight climate change and pollution”). According to Representative Henry Waxman of California, and Chair of the House Energy and Commerce Committee, “Research is underway to develop microbes that would produce oil, giving us a renewable fuel that could be used interchangeably with gasoline without creating more global warming pollution.” Not only that, “research could also lead to oil-eating microbes, an application that, as the Gulf spill unfortunately demonstrates, would be extremely useful.” A relatively new and controversial topic, synthetic biology promises a better future for mankind due to its beneficial impact on the environment.
Emerge of recombinant DNA technology provided an immense potential in the field of plant transformation. Transgenic plants detection in most crop species in order to minimize regeneration of non-transformed tissues after transformation requires the use of selectable marker genes and selective agents. The commonly used selectable markers in plant transformation systems are genes conferring resistance to toxic compounds such as herbicides or antibiotics. The negative selectable marker genes routinely used in Nicotiana tabacum transformation are genes that confer resistance to the antibiotic kanamycin. However, the presence of these genes or the derived proteins are undesirable in crop plants grown in the field, because of the public concern
Synthetic biology has a lot to offer in fundamental research. Starting from the most well characterised laboratory organism, E.coli, we are still in half way from full knowledge of understanding the function of all its genes as the functions of 20% of them are still to be identified (Keseler et al., 2011). Moreover there are many more other microorganisms with great importance which are even less-well understood.
In recent years, numerous DNA-based methods have been developed to identify a variety of medically important fungi. (20) The internal transcribed spacer (ITS) region of the fungal ribosomal RNA is one of the most commonly used targets. The ITS region exists in multiple copies in the fungal genome and shows high interspecies sequence divergence and low intraspecies sequence variation. (20) Fungal identification methods based on ITS include restriction fragment length polymorphism analysis, sequence analysis, multiplex PCR, real-time PCR, probe hybridization and DNA array. (21-25)
Guy11 was used as wild type of M. oryzae for transformation in this study. Mycelia harvested from liquid CM was used for DNA and RNA extractions. For vegetative growth, small squares of mycelia were cut from the edge of 7-day-old strains and placed onto the media (CM, MM, OM and SDC) and incubated in the dark at 28°C for another 7 days. For conidia collection, mycelial blocks were inoculated on SDC (100 g of straw, 40 g of corn powder, 15 g of a gar in 1 L of distilled water) agar media [50] maintain at 28°C for 7 days in the dark followed 3 days continuous illumination under fluorescent light.