transporters vary between eukaryote and prokaryote organisms, ABC protein shows highly conservative amino acid domains within NBDs. However, NBD have three well studies motifs; ATP-binding sequences for the phosphate-binding loop (P-loop or Walker A motif), walker B boxes, and ABC signature, ex (LIVMYA), which is fix in between Walker boxes (Akifumi Sugiyama, et al, 2006) Plant ABC transporters uses different nomenclatures to shape plant ABC subfamilies, a consistent nomenclature with Human Genome Organization which are the more acceptable and useable method. Plant ABC transporters comes into eight subfamilies; A, B, C, D, E, F, G, and I. However, ABCH not included within this group, as not yet identified in plant system (Verrier P J et al., 2008). Among eight groups of ABC transporter gene members, more genes number found within ACBB, ABCC, and ABCD transporter group cross all plant species (Thomas S. Lane et al., 2016). ABCB and ABCC reported to having role in export and import, cellular and long distance, auxin transport (Geisler, M. and Murphy, A.S. 2006), D group involve in auxin efflux (Strader and Bartel, 2011). AtRlI2 a member of E subfamily found to be interfering with RNA pathway (Braz et al., 2004). A and F subfamily has not yet functionally characterized in plant system (Verrier P J et al., 2008, for review). medi- ate the cellular and long-distance transport of the plant hormone auxin. Auxin paly crucial role at different stages in plant architecture and
Eukaryotic organisims have an advanced system of intracellular organelles. Each organelle membrane has a specific arrangement of proteins and lipids. Inside cell, an acurate and highly co-ordinated vesicular trafficking pathways operate for establishment and maintenance of compartmentalization. This intracellular compartments creates specialized environments for various chemical reactions, important for cellular function (Warren and Mellman 2006). The trafficking process begins with the budding of transport vesicles from donor membranes and ends with their fusion to target organelles. A single round in the transport process (vesicle budding to its fusion) involves two classes of RAS-like, small GTPase family proteins (serve as switch
The reasoning behind this experiment was to be able to specify which molecules are capable of transporting in and out of the cell through the process of diffusion. Diffusion is the process where molecules move from a level of high concentration to low concentration and eventually stops once the equilibrium is reached. This study was able to demonstrate that glucose, starch, and silver nitrate were all existing at different amounts. Results began to show after around 40 minutes, but when we first started the experiment, no particles were present.
Cancer is one of the most dangerous and fatal diseases, which is caused by uncontrolled growth and proliferation of cells. Cancer cells’ survival, progression and metastasis are tightly associated with the cellular components. For example, when cells metastasizing, they use cell protrusion which provided by the actin cytoskeleton to penetrate the extracellular matrix, they also secrete plasminogen activator to increase protease plasmin’s activity in order to penetrate the membrane. Then some of the tumor cells transfer to other tissue and form metastatic tumor. The specific functions of several cell structures and transporters in tumor cells are discussed as follows.
Cell membranes of eukaryotes are complex in structure, comprised of a highly regulated heterologous distribution of lipids and proteins (Hanada, 2010). This distribution is determined to some extent by the location and topology of lipid synthases, and results from the trafficking of proteins and lipids (Hanada, 2010). Within the cell, transport vesicles and tubules mediate trafficking by loading desired sets of proteins at one organelle and delivering them to the next (Hanada, 2010; Kumagai et al., 2005). Lipid influx routes such as the endocytosis of membrane lipids add further to the diversity (Hanada, 2010). The result is an asymmetric distribution of protein and lipid types across the membrane phospholipid bilayer (Hanada, 2010).
Six GhTRX genes were selected randomly to analyze their function in specific tissue, leaf development stages, phytohormones and abiotic stress. In specific tissue, all genes were highly expressed in various tissues suggesting that these genes may have crucial functions in cotton growth and development. These results agree with previous study in
In this article examples are going to be discussed of the application of molecular biology in the field of plant ecology, what molecular biology is as well as what plant ecology is. Plant ecology is one of the branches in the scientific field of ecology that mainly focus on plant population and their surroundings (McMahon, 2016). Plant ecologists also look at other factors that have an impact on the plants and their environment. According to the MIT Department of Biology, plant molecular biology is the study where biological data such as plants genetics, genomes, biochemical and the cell biologics is inserted into computers to understand the development, growth and physiology of plants at a molecular level. The examples that is going to be
Xylem is located in the middle section of the of a plant stem. It can be found close with other transport tissues in plants such as phloem –which transports sugars and amino acids in the plant. In non-woody plants, xylem forms bundle with phloem in order words the vascular bundles. Xylem is thickened with deposits of lignin that provides mechanical support in plants. Protoxylem(primary xylem) can be grown into metaxylem(secondary xylem) by secondary growth in the actively dividing vascular cambium. It is found in vascular plants which is responsible
As a ubiquitously occurring plant growth regulator, JA has been reported to contribute significantly in plant stress defense by playing role as a signal of developmentally or
Integral proteins: In the cytoplasmic membrane called UNIPORT3 solid basic tools to do the installation of the membrane, transporting material cross, symporter more importantly antiporter
It has been well established that SNARE proteins stimulate fusion reactions by forming a complex with four-alpha-helix bundle known as the trans-SNARE complex or SNAREpin. One alpha-helix is contributed by the SNARE proteins residing on vesicle by its C-terminus trans-membrane domain (TMD). Therefore, this SNARE protein is named as v-SNARE. The other three alpha helixes are provided by t-SNARE which are associated with target membrane by either C-terminus TMD or other mechanisms such as palmlation (spelling?). Formation of the SNARE complex provides energy to overcome the repulsive force between the opposite
Unlike animals, plants are sessile though having the ability to adapt adverse stresses in their environment such as drought, cold, high salt, etc. When plants are stressed with these conditions, ABSCISIC ACID (ABA) level is increased in plants. The ABA triggers the adaptive responses which are required for the survival and productivity of plants. ABA is crucial phyto-hormone that mediates 10% of total transcriptional factors (TFs), which is higher compared to other phyto-hormones in Arabidopsis thaliana (Fujita et al., 2011). The vast numbers of genes which are induced by environmental conditions are activated by ABA. Among those genes, the members of bZIP family are expressed in ABA dependent manner during stressed conditions.
In humans, the Na+-K+-2Cl– cotransporter is encoded by the SLC12A2 gene. These proteins have the same predicted structure with a large, hydrophobic region containing 12 transmembrane α-helices surrounded by the hydrophilic N- and C- terminal cytoplasmic regions. The transmembrane-spanning domains function to allow ion transport and the N- and C- terminal regions are responsible for regulation. There is also a large, extracellular, glycosylated loop located between helices 7 and 8
The evolution of ACC also brings about the production of 5¢-methylthioadenosine-nine. Increase in the rate of respiration of the fruit gives ATP (Adenosine triphosphate) need for the methionine cycle and can lead to induced ethylene production without high levels of intracellular methionine. SAM is a crucial methyl giver and relates to numerous aspects of cellular metabolism. Thus, the two steps involved in the synthesis of ethylene is the formation of ACC and its conversion into ethylene. The genes encoding ACS and ACO have therefore been studied more deeply than other enzymes in the pathway, although there is proof that a few other genes concerned with methionine synthesis and methionine salvage pathway are differentially demonstrated throughout ripening and in response to ethylene (Alba and others 2005; Zegzouti and others 1999). ACS and ACO are encoded by multigene families in higher plants, with tomato having at most nine ACS (LEACS1A, LEACS1B, and LEACS2-8) and five ACO (LEACO1-5) genes (Barry and others 1996; Nakatsuka and others 1998; Oetiker and others 1997; Van-der-Hoeven and others 2002; Zarembinski and Theologis 1994). Expression survey has disclosed that at least four ACS (LEACS1A, LEACS2, LEACS4, LEACS6) and three ACO (LEACO1, LEACO3, LEACO4) genes are differentially shown in tomato fruit (Barry and others 1996, 2000; Nakatsuka and others 1998; Rottmann and others 1991). LEACO1, LEACO3, andLEACO4 are shown at low levels in green fruits that are in the first
While xylem transports water and nutrients that generally originate at the roots, phloem transports food (in the form of sugars), hormones, and mRNA which generally originate in the leaf of the plant. Additionally, while water is moved through passive transport, food requires energy to be driven throughout the length of the root and shoot, and is thus carried through active transport. Food transport is said to go from a source (where it is made) to a sink (where it is needed) (Vaucher, 2003).
The functional genomics studies have shown the involvement of plant miRNAs in many developmental processes of plant (Jones et al., 2006), response to biotic and biotic stresses, hormone signalling (Frazier et al., 2011, Jagadeeswaran et al., 2009), signal transduction, protein degradation (Zhou et al., 2010; Zhang et al., 2008), transgene suppression (Allen et al., 2005), disease development (Johnson et al., 2005), defense against viruses (Bennasser et al., 2004), molecular mechanisms regulating developmental transitions, such as seed germination, vegetative and reproductive phase changes, flowering initiation, seed production and root development (Yang et al., 2011) and nutrient deprivation and heavy metals (Chen et al., 2012).