Match each of the following mechanisms with how it can change the levels of geneproducts--whether on different operons or within the same operon.Different promoters mighthave different DNAsequencesTranslation initiationsequences can causedifferent open reading1. Differences in mRNA levelsBETWEEN operonsframes to be translated2. Differences in protein levelsWITHIN an operondifferently.The secondary structures ofMRNA can differ which canchange the rate ofdegradation of transcripts.

Operons are DNA segments that include groups of associated genes. They consist of a promoter region,…

Match each of the following mechanisms with how it can change the levels of gene products--whether on different operons or within the same operon. Different promoters might have different DNA sequences Translation initiation 1. Differences in mRNA levels BETWEEN operons sequences can cause different open reading frames to be translated differently. 2. Differences in protein levels

Match each of the following mechanisms with how it can change the levels of gene products--whether on different operons or within the same operon. Different promoters might have different DNA sequences Translation initiation 1. Differences in mRNA levels BETWEEN operons sequences can cause different open reading frames to be translated differently. 2. Differences in protein levels

Biology 2e

2nd Edition

ISBN:9781947172517

Author:Matthew Douglas, Jung Choi, Mary Ann Clark

Publisher:Matthew Douglas, Jung Choi, Mary Ann Clark

Chapter16: Gene Expression

Section: Chapter Questions

Problem 9RQ: The a/a operon is an inducible operon that controls the production of the sugar arabinose. When...

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. In an effort to determine the location of an operator sitefor a negatively regulated gene, you have made a seriesof deletions within the regulatory region. The extent ofeach deletion is shown by the line underneath the sequence, and the resulting expression from the operon(i = inducible; c = constitutive; − = no expression) isalso indicated.... GGAT C T T AGCCGGCTAACATGATAAATATAA......C C T AGAATCGGCCGA TTGTA C T A TTT ATAT T ...1 i2 –3 c4 –5 ca. What can you conclude from these data about thelocation of the operator site?b. Why do you think deletions 2 and 4 show no expression of the gene?
One of the main lessons of this chapter is that severalbacterial genes are often transcribed from a singlepromoter into a large multigene (polycistronic) transcript. The region of DNA containing the set of genesthat are cotranscribed, along with all of the regulatoryelements that control the expression of these genes, iscalled an operon.a. Which of the mechanisms in the following listcould explain differences in the levels of themRNAs for different operons?b. Which of the mechanisms in the following listcould explain differences in the levels of theprotein products of different genes in the sameoperon?i. Different promoters might have different DNAsequences.ii. Different promoters might be recognized bydifferent types of RNA polymerase.iii. The secondary structures of mRNAs might differ so as to influence the rate at which they aredegraded by ribonucleases.PROBLEMSProblems 575a. Why did the mating with a nonlysogenic recipientresult in phage growth and release, but the infectionof a…
You are studying an operon containing three genesthat are cotranscribed in the order hupF, hupH, andhupG. Diagram the mRNA for this operon, showingthe location of the 5′ and 3′ ends, all open readingframes, translational start sites, stop codons, transcription termination signals, and any regions thatmight be in the mRNA but do not serve any of thesefunctions.
The promoter of an operon is the site to which RNApolymerase binds to begin transcription. Certain basechanges in the promoter result in a mutant site towhich RNA polymerase cannot bind. Would you expect mutations in the promoter that prevent binding ofRNA polymerase to act in trans on another copy ofthe operon on a plasmid in the cell, or only in cis onthe copy immediately adjacent to the mutated site?
The activator (V protein) that is present in the bacterial cell is normally phosphorylated, but only binds to the A site in the operon when it is not phosphorylated. What operon-independent mechanism can regulate the binding of (and also ultimately regulates the removal of) protein V to the A site? Describe this binding/removal mechanism in detail – useappropriateterminologythatwasdiscussedinlecture. Aspartofyouransweraboutthisactivatorproteinbindingto (and then detaching from) the A site of the operon, be sure to address what are the results of this type of control in terms of function of the operon.
You have isolated two different mutants (reg1 andreg2) causing constitutive expression of the emu operon (emu1 emu2). One mutant contains a defect in aDNA-binding site, and the other has a loss-of-functiondefect in the gene encoding a protein that binds tothe site.a. Is the DNA-binding protein a positive or negativeregulator of gene expression?b. To determine which mutant has a defect in the siteand which one has a mutation in the binding protein, you decide to do an analysis using F′ plasmids. Assuming you can assay levels of the Emu1and Emu2 proteins, what results do you predict forthe two strains (i and ii; see descriptions below) ifreg2 encodes the regulatory protein and reg1 is theregulatory site?i. F′ (reg1−reg2+emu1−emu2+)/reg1+reg2+emu1+emu2−ii. F′ (reg1+reg2−emu1−emu2+)/reg1+reg2+emu1+emu2−c. What results do you predict for the two strains(i and ii) if reg1 encodes the regulatory proteinand reg2 is the regulatory site?
Maltose utilization in E. coli requires the proteins encoded by genes in three different operons. One operonincludes the genes malE, malF, and malG; the secondincludes malK and lamB; and the genes in the thirdoperon are malP and malQ. The MalT protein is apositive regulator that controls the expression of allthree operons; expression of the malT gene itself iscatabolite sensitive.a. What phenotype would you expect to result from aloss-of-function mutation in the malT gene?b. Do you expect the three maltose operons to containbinding sites for CRP (cAMP receptor protein)?Why or why not?In order to infect E. coli, bacteriophage λ binds to themaltose transport protein LamB (also known as the λreceptor protein) that is found in the outer membraneof the bacterial cell. The synthesis of LamB is induced by maltose in the medium via expression of theMalT protein, as described above
Maltose utilization in E. coli requires the proteins encoded by genes in three different operons. One operonincludes the genes malE, malF, and malG; the secondincludes malK and lamB; and the genes in the thirdoperon are malP and malQ. The MalT protein is apositive regulator that controls the expression of allthree operons; expression of the malT gene itself iscatabolite sensitive.a. What phenotype would you expect to result from aloss-of-function mutation in the malT gene?b. Do you expect the three maltose operons to containbinding sites for CRP (cAMP receptor protein)?Why or why not?In order to infect E. coli, bacteriophage λ binds to themaltose transport protein LamB (also known as the λreceptor protein) that is found in the outer membraneof the bacterial cell. The synthesis of LamB is induced by maltose in the medium via expression of theMalT protein, as described above.c. List the culture conditions under which wild-typeE. coli cells would be sensitive to infection bybacteriophage…
ne of the main lessons of this chapter is that several bacterial genes are often transcribed from a single promoter into a large multigene (polycistronic) transcript. The region of DNA containing the set of genes that are cotranscribed, along with all of the regulatory elements that control the expression of these genes, is called an operon. a. Which of the mechanisms in the following list (i-vi) could explain differences in the levels of the protein products of different genes in the same operon? Different promoters might have different DNA sequences Different promoters might be recognized by different types of RNA polymerase The secondary structures of mRNAs might differ which will influence the rate at which they are degraded by ribonucleases. In an operon, some genes are farther away from the promoter than other genes The translational initiation sequences at the beginning of different open reading frames in an operon might result in different efficiencies of translation Proteins…
The E. coli MalT protein is a positive regulator ofseveral mal operons, which are induced in the presenceof the sugar maltose. The gene that encodes MalT wasidentified in a screen for mutants causing constitutiveexpression of mal operons; the operons were transcribedeven in the absence of maltose. The screen involved alacZ transcriptional fusion reporter gene in which theregulatory region of a maltose-inducible operon wasfused to the coding sequences of lacZ.a. Bacteria with a lacZ− mutation are transformedwith the reporter gene and spread on petri platescontaining the β-galactosidase substrate X-gal.What color would the colonies be if the plates alsocontained maltose? What if the plates had X-galbut no maltose?b. In the screen, scientists mutagenized the lacZ− bacteria before transforming them with the reportergene, and then spread the transformed bacteria onplates with X-gal and no maltose. All of the colonies were white except for one colony that wasblue. At this stage of the…
The figure at the beginning of this chapter showsthe binding of both a Lac repressor tetramer and aCRP-cAMP complex to the regulatory region of thelac operon.a. What is the key feature of a regulatory protein suchas the Lac repressor or CRP that allows it to regulate specifically the genes or operons it is supposedto control?b. On the figure, show the positions of the followingcomponents: (i) A Lac repressor monomer; (ii) a Lacrepressor dimer; (iii) all four DNA binding domains ofthe Lac repressor tetramer; (iv) a single helix-turnhelix motif; (v) the o1 part and either the o2 or o3 partsof the lac operator (assume the operon would be transcribed from right to left on the figure); (vi) themultimerization domains of the four Lac repressormonomers; (vii) an inducer-interacting domain; (viii)the CRP-cAMP complex; and (ix) a DNA loop.c. What is the physical basis for the formation of theDNA loop shown in the figure?d. On the figure, show the position of two axes ofsymmetry in the sequence…
Resection of a bacterial chromosome in which genes for the enzymes of of a particular metabolic pathway are clusteredtogether in a functional complex under coordinate control is called operon activator promotor repressor operator