shows the specificity pockets. The S₁ pocket has a glutamic acid in the bottom, the S₂ pocket is small and hydrophobic, and the S₁ pocket is deep and hydrophobic. Suggest a 3-amino acid sequence that this protease would cleave and indicate between which sites the peptide bond would be broken. Which sequence would this protease cleave? O Arg-Ala-Phe Phe-Ala-Arg O Arg-Phe-Ala Ala-Arg-Phe Phe-Arg-Ala Ala-Phe-Arg ww 010 910 R₂ S1 10 R₂ Si

Organic And Biological Chemistry
7th Edition
ISBN:9781305081079
Author:STOKER, H. Stephen (howard Stephen)
Publisher:STOKER, H. Stephen (howard Stephen)
Chapter9: Proteins
Section: Chapter Questions
Problem 9.58EP
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The peptide bond that is broken is between which sites?
S₂ and S₁, and S₁ and S₁'
OS₁ and S₁'
OS₂ and S₁
OS₂ and S₁'
Transcribed Image Text:The peptide bond that is broken is between which sites? S₂ and S₁, and S₁ and S₁' OS₁ and S₁' OS₂ and S₁ OS₂ and S₁'
Consider the hypothetical serine protease in the image, which
shows the specificity pockets. The S₁ pocket has a glutamic
acid in the bottom, the S₂ pocket is small and hydrophobic,
and the S₁ pocket is deep and hydrophobic. Suggest a
3-amino acid sequence that this protease would cleave and
indicate between which sites the peptide bond would
be broken.
Which sequence would this protease cleave?
Arg-Ala-Phe
Phe-Ala-Arg
Arg-Phe-Ala.
Ala-Arg-Phe
Phe-Arg-Ala
Ala-Phe-Arg
MA
010
R₂
S1
S₁
11o
H R₁
Si
910
Transcribed Image Text:Consider the hypothetical serine protease in the image, which shows the specificity pockets. The S₁ pocket has a glutamic acid in the bottom, the S₂ pocket is small and hydrophobic, and the S₁ pocket is deep and hydrophobic. Suggest a 3-amino acid sequence that this protease would cleave and indicate between which sites the peptide bond would be broken. Which sequence would this protease cleave? Arg-Ala-Phe Phe-Ala-Arg Arg-Phe-Ala. Ala-Arg-Phe Phe-Arg-Ala Ala-Phe-Arg MA 010 R₂ S1 S₁ 11o H R₁ Si 910
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