Introduction
The Alu elements are the most abundant in the human genome and are present in more than one million copies. They belong to the Short Interspersed Nuclear Elements family of repetitive elements (Hasler and Strub). The presence of the Alu elements had a great influence on the evolution of the human genome. The Alu elements can also lead to both duplications and deletions of DNA segments and provide new regulatory elements to neighboring genes (Hasler and Strub). From this lab, I am trying to find my allele genotype for the Alu gene, and to determine whether the Alu gene is heterozygous, homozygous, or neither.
Description of methods used DNA extraction is the removal of deoxyribonucleic acid from the cells or viruses. The extraction of DNA is an early step in diagnostic processes used to detect bacteria and viruses in
…show more content…
I added 1 g of the agarose powder to 100 ml of TAE buffer in an Erlenmeyer flask. Using a magnetic stir bar, the agarose is heated until it is a completely clear solution. The agarose is poured into the chamber to make wells deep enough to hold 30 µl of solution. I inserted the comb in the chamber and waited for the gel to harden. To prepare for the samples, 10 µl of the XC loading buffer was added into the PCR tube. The professor demonstrated the techniques to load the gel with the DNA samples. After learning the techniques, I added my PCR sample in one the the wells. To run the gel, the power supply was set to 100V for approximately 30 minutes. To stain the gel, the gel was removed from the electrophoresis chamber and was placed into the FastBlast staining tray. The gel was placed in the staining tray for 2 minutes. Then the gel was rinsed for 10 seconds in Wash Tray 1. After rinsing for 10 seconds, the gel was washed for 5 minutes in Wash Tray 2. After agitating the gel for every minute in Wash Tray 2, the gel was washed for another 5 minutes in Wash Tray
There are three specific steps required to isolate DNA from its cellular contents. The steps used to remove and expose DNA from its cell are: breaking down the food type you are using by crushing it, for example a banana or strawberries, exposing the substance to a sodium chloride (NaCl) solution, subjecting the product to detergent solution (dH2O), filtering the solution and lastly, the addition of ethanol. When beginning with a solid substance, such as a banana, crushing the substance allows for
How to determine where the restriction enzymes, Ava II and Pvu II, sliced the DNA.
The Alu sequences epitomize the largest family of repetitive elements found in humans with over 5000 copies found in each genome1. They are widely considered to be a strong source of genetic variation, even possibly being the
The information above shows the results observed from the experiment. The unknown substance was first observed to be a white, powder that had no smell. When it was mixed with the water, it produced a clear odorless solution. The pH was taken immediately from the solution once it was mixed properly. The pH came out to a 10 on a 14 level scale. This indicated that the solution was a strong alkaline base. With this information, the list of possible solutions are narrowed down to only basic solutions. After dividing the solution into five test tubes, the first test was conducted. The first test was conducted using silver nitrate. The results shows a milky white precipitate. According to Doc Brown, an online informational website, by adding the
Gel electrophoresis is a method of taking DNA samples and turning them into visuals that can be compared and analyzed. First, DNA fragments are placed on a layer of agarose gel, and when electricity is added, the DNA fragments move through the gel. The smaller fragments move faster than the larger ones. Afterward, you can see how the different lengths of
Being able to gather large amounts of DNA together has many potential advantages. It is possible to collect this DNA and use it for purposes such as research for medical uses. To extract the DNA from cells, you need to follow a series of steps which will result in the separation of DNA from other parts of the cell. After following the procedure, you will be left with a stringlike mass of DNA that can be easily examined.
Proteins are responsible for things like enzymes, antibodies, structure, transport, storage, and messaging. In order for proteins to function properly and provide these functions in the body, deoxyribonucleic acid is (DNA) required. DNA provides ribonucleic acid (RNA) that is translated into a certain protein. These concepts lay the foundation for labs 5 through 7.
One common technique used to study Alu insertion polymorphisms within genomes utilizes polymerase chain reactions (PCR) in combination with agarose gel electrophoresis (Asari, 2012). PCR is utilized initially, in order to selectively amplify DNA sequences containing the Alu insertion. This technique employs sequence-specific primers and taq polymerase in order to carry out successive rounds of elongation (essentially, DNA replication). Once this is complete, it is common to use agarose gel electrophoresis and UV light to visualize the bands of separated DNA. In terms of this experiment, cheek cells were obtained from UNR students in the Biology 395 lab. Using the two described techniques, genotypic frequencies were calculated for the human-specific Alu insertion on chromosome 16: homozygous for the insertion (+/+) heterozygous for the insertion (+/-), and homozygous for the absence of insertion (-/-). As stated previously, the Alu element is the most abundant SINE in the human genome, with over 1 million copies accounting for 10% of the entire genome (Price, Eskin & Pevzner, 2004). From this fact, we deduce that we will result in rejection of the null hypothesis stating that students in the Biology 395 lab are in Hardy-Weinberg equilibrium for the Alu
The analysis process begins collecting samples. In particular, DNA can be extracted from different samples as fresh blood, dried
Once my DNA has been sent to a lab for analysis, a sequencing method can be used to tell me what my DNA sequence is. Because there is the potential for the sample that I sent to not have a great deal of DNA available, polymerase chain reaction may be used to amplify the DNA to get a better sample to analyze. In polymerase chain reaction, they will take the small sample of DNA that I have provided along with two oligonucleotide primers, Taq polymerase, and four deoxynucleotide triphosphate and amplify the sample of DNA. In the first step, the DNA is heated to 95 degrees Celsius in order for the two strands of DNA to separate from each other. After the solution has cooled down to 54 degrees Celsius, short DNA primers hybridize to the DNA. Finally, after raising the temperature to 72 degrees
Biotechnology is field where everything constantly changes. The rapid growth and development of cutting edge technology is invariably dependent on innovation of scientists and their ability to see a potential in a basic molecular technique and apply it to new processes. DNA sequencing is also dependent on our ability to use gel electrophoresis to separate strands of DNA that differ in size by as little as one base pair.
Gel electrophoresis is a commonly used laboratory technique employed in biochemistry and molecular biology (ARBL, 2000). The two most conventional types of gels used for DNA electrophoresis are agarose and polyacrylamide (PA). The two substances differ in factors such as resolving power and in the difficulty of setting up and handling them (ARBL, 2000). In comparison to the polyacrylamide, agarose gels are used more commonly as it may also be refrigerated and re-used, and runs horizontally (Reina, 2014). Gel electrophoresis through an agarose channel is used to identify, quantify and purify nucleic acid components (Life Technologies, 2015). The samples of DNA are loaded into wells of agarose gel which is then subjected to an electric current,
This is useful for pathogens that are difficult to culture, or where such culturing is potentially hazardous. The amplified products of PCR, however, are not immediately identifiable, and must be put through another process known as gel electrophoresis before data can be analysed. Gel electrophoresis involves the separation and analysis of DNA (or many other macromolecules) based on size and charge. Nucleic acid molecules are separated by applying an electric current to move negatively charged strands through a solution of agarose gel. Shorter fragments move faster and migrate further than longer fragments, meaning the base length of an unknown fragment can be measured against a known fragment in order to identify it. This is seen through coupling the DNA with a fluorescent tag (marker).
(http://www.banglajol.info/index.php/AKMMCJ/article/viewFile/13682/9836). This method was used as it amplifies the DNA, which is required. Secondly, Agrose Gel Electrophoresis was used. “This laboratory technique is used to separate fragments of DNA by a charge.” (http://www.biotecharticles.com/Applications-Article/Agarose-Gel-Electrophoresis-805.html)
The purpose of DNA extraction is to isolate the DNA from saliva and other unnecessary materials.We first centrifuged the samples in their tubes to maximize the number of particles in a solution. Then added different buffers and proteins to break cells, tissue, and the cell membrane to get the DNA by itself.