Agarose gel electrophoresis is a technique used to separate DNA fragments on an agarose matrix. The DNA is then viewed by staining or under UV light. (i) What is the direction of DNA migration in electric field on the agarose gel? (ii) Explain the principle for the migration of DNA molecules in an electric field. (iii) DNA loading dye is used to prepare DNA markers and samples for loading on the agarose gel. State the function of bromophenol blue in the loading dye.
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- How are DNA molecules visualized in a gel after electrophoresis? Why do DNA molecules migrate toward the + electrode? What determines the rate of their migration? What is the effect of PEG on DNA fragments of different sizes? How is this influenced by the concentration of PEG?What additive in the agarose gel solution allows the DNA to fluoresce (glow) under UV light? How does this work?What do you mean by amphoteric substance? Give examples of substance that is/are amphoteric. What is the purpose of the power supply in gel electrophoresis? Among the short and long strand of DNA, which moves the farthest in the gel and why? What is the purpose of buffer in agarose gel electrophoresis?
- What is the role of GelRed® in Agarose gel electrophoresis of DNA fragments? GelRed® moves down the agarose gel in response to the electric current and enables visualisation of the position of the nucleic acids within in the agarose gel. GelRed® intercalates with the Nucleic acid and, under UV light, fluoresces to enable visualisation of the position of the nucleic acids in the agarose gel. GelRed® intercalates with the Nucleic acid and enables visualisation of the position of the nucleic acids in the agarose gel. GelRed® intercalates with the amino acids in the agarose gel and enables visualisation of the position of their in the agarose gel.Which of the DNAs shown in Figure would move fastest during agarose gel electrophoresis?What is the concentration of a DNA solution that absorbs 0.812 and 0.463 at 260 and 280 nm, respectively? Is the DNA solution considered to be good quality? Why or why not?
- What volume of 4X loading buffer must be added to 21 micro L of DNA in a technique for DNA sample preparation for agarose gel electrophoresis to generate a 1X buffer solution?When proteins are separated using native gel electrophoresis, size, shape, and charge control their rate of migration on the gel. Why does DNA separate based on size, and why do we not worry much about shape or charge?"Hybridization of a single-stranded DNA molecule attached to a fluorophore with a preparation of metaphase chromosomes that have been partially denatured" is a description of which laboratory method?
- For human genomic DNA what is the expected fragment size for high molecular weight DNA extracts? What is an important component of gel electrophoresis which is omitted from this result, why would it be important to include ?You add 3.0 µg of plasmid DNA to a QIAprep spin miniprep purification column. You perform the binding in a binding buffer at pH 6.8. What portion (%) of the 3.0 µg of plasmid DNA would you expect to bind to the column in these conditions? What portion (%) of the bound plasmid DNA would you expect to elute using elution buffer at pH 8.5? Make the following assumptions:• Solid phase silanol groups can have a very wide range of pKas. For the purpose of this problem, assume the silica gel functional group (silanol) in the DNA purification column matrix has a pKa of 7.5.• If a DNA molecule and column matrix functional groups have the same charge state, then that DNA molecule will be repelled and will not bind to the column. If they do not have the same charge, binding occurs.What is the velocity of movement (in micrometers per second) of DNA polymerase III holoenzyme relative to the template?