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What is the length in basepairs of these sequences? How many base substitutions are there between these sequences? Count ONLY the instances where there is ANY nucleotide difference between any of the sequences (leave out any indels in this count) Are there any indels in this alignment? (yes or no)

What is the length in basepairs of these sequences? How many base substitutions are there between these sequences? Count ONLY the instances where there is ANY nucleotide difference between any of the sequences (leave out any indels in this count) Are there any indels in this alignment? (yes or no)

Aquaculture Science
Aquaculture Science
3rd Edition
ISBN:9781133558347
Author:Parker
Publisher:Parker
Chapter11: Health Of Aquatic Animals
Section: Chapter Questions
Problem 18SA
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  1. What is the length in basepairs of these sequences?
  2. How many base substitutions are there between these sequences? Count ONLY the instances where there is ANY nucleotide difference between any of the sequences (leave out any indels in this count)
  3. Are there any indels in this alignment? (yes or no)
D0183143.1 DQ183141.1 DQ183142.1 TCGGAGAGACCTATTACTATCATGGTGAAAGTGACACTGATCGTTGCCATTGTGGCTGCT 60 TCGGAGAGACCTATTACTATCATGGTGAAAGTGACACTGATCGTTGCCATTGTGGCTGCT 60 TCGGAGAGACCTATTACTATCATGGTGAAAGTGACACTGATCGTTGCCATTGTGGCTGCT 60 D0183143.1 DQ183141.1 DQ183142.1 CTTGCTATCTCGGCTCACGCAGAAAGAGATTTCAATGAACGACGAGGAAAGGAGAATGCC 120 сттссТАТстссСстСААGСАCGAAGAGAтттCААТСААCGACGAGCAAAGGAGAATGGс 120 120 CTTGCTATCTCGGCTCACGCACGAAGAGATTTCAATGAACGACGAGGAAAGGAGAATGGC DQ183143.1 DQ183141.1 DQ183142.1 AGAGAGAGAGGACAAGGTGGCTTTGAAGGAAGGCCTGGTGGAATGCAGACGGGTAGTCCT 180 AGAGAGAGAGGACAAGGTGGCTTTGGAGGAAGGCCTGGTGGAATGCAGACGGGTAGTCCT 180 AGAGAGAGAGGACAAGGTGGCTTTGGAGGAAGGCCTGGTGGAATGCAGACGGGTAGTCCT 180 DQ183143.1 DQ183141.1 D0183142.1 AGGCAAGATGGTGGACCAATGGGTGGAATGAGGTTCGATGGACCTGAATCTGGTGCCCCA 240 AGGCAAGATGGTGGACCAATGGGTGGAATGAGGTTCGATGGACCTGAATCTGGTGCCCCA 240 AGGCAAGATGGTGGACCAATGGGTGGAATGAGGTTCGATGGACCTGAATCTGGTGCCCCA 240 DQ183143.1 DQ183141.1 DQ183142.1 CAAATGGATGGACGCAGACAAAATGGCGGTCCGATGGGTGGTAGGAGATTCGACGGACCT 300 CAAATGGATGGACGCAGACAAAATGGCGGTCCGATGGGTGGTAGGAGATTCGACGGACCT 300 CAAATGGATGGACGCAGACAAAATGGCGGTCCGATGGGTGGTAGGAGATTCGACGGACCT 300 DQ183143.1 DQ183141.1 DQ183142.1 CGATTTGGTGGCTCCAGACCAGATGGTGCTGGAGGAAGACCTTTCTTCGGCCAAGGAGGC 360 CGATTTGGTGGCTCCAGACCAGATGGTGCTGGAGGAAGACCTTTCTTCGGCCAAGGAGGC 360 CGATTTGGTGGCTCCAGACCAGATGGTGCTGGAGGAAGACCTTTCTTCGGCCAAGGAGGC 360 DQ183143.1 DQ183141.1 DQ183142.1 AGGCGTGGTGATGGAGAAGAAGAAACTGATGCTGCCCAACAAATTGGTGATGGTCTAGGA 420 AGGCGTGGTGATGGAGAAGAAGAAACTGATGCTGCCCAACAAATTGGTGATGGTCTAGGA 420 AGACGTAGTGATGGAGAAGAAGAAACTGATGCTGCCCAACAAATTGGTGATGGTCTAGGA 420 DQ183143.1 DQ183141.1 GGGCCCGGTCAGTTTGATGGTCCTGGACGTCGTCATCATGGTAGAAAGCCTTTCGGAGAC 480 GGGCCCGGTCAGTTTGATGGTCCTGGACGTCGTCATCATGGTAGAAAGCCTTTCGGAGAC 480 DQ183142.1 GGGCCCGGTCAGTTTGATGGTCCTGGACGTCGTCATCATGGTAGAAAGCCTTTCGGAGAC 480 DQ183143.1 D0183141.1 DQ183142.1 СGTСССТТCGGCAGACGCAACСАТАСAGAAGСТСАССAGGGTСАТААТGAGACGGGAGAC 540 CGTCCCTTCGGCAGACGCAACCATACAGAAGGTCACCAGGGTCATAATGAGACGGGAGAC 540 СGTСССТТCGGCAGACGCAACСАТАСAGAAGСТСАССAGGGTСАТААТGAGACGGGAGAC 540 DQ183143.1 DQ183141.1 DQ183142.1 САСССССАТССТСАТСАСААСАAGACCAGAGАTGGAGATCAGGACAGACCAATGTTCCAG 600 CACCCCCATCGTCATCACAACAAGACCAGAGGTGGAGATCAGGACAGACCAATGTTCGAG 600 CACCCCCATCGTCATCACAACAAGACCAGAGATGGAGATCAGGACAGACCAATGTTCGAG 600 D0183143.1 DQ183141.1 ATGAGGCCCTTTCGGTTCAACCCCTTCGGTAGAAAGCCTTTCGGAGACCGTCCCTTCGGC 660 ATGAGGCCCTTTCGGTTCAACCCCTTCGGTAGAAAGCCTTTCGGAGACCGTCCCTTCGGC 660 DQ183142.1 АТСAGGCCCTттсGGTTCAACсссттсGGTAGAAAGCCTTTCGGAGACCGTCCсттссGC 660 D0183143.1 DQ183141.1 DQ183142.1 AGACGCAACGGAACCGAGGAAGGATCTCCCAGGCGTGATGGCСААCСТСGGCCССАТGGT 720 AGACGCAACGGAACCGAGGAAGGATCTCCCAGGCGTGATGGCCAACGTCGGCCCTATGGT 720 AGACGCAACGGAACCGAGGAAGGATCTCCCAGGCGTGATGGCCAACGTCGGCCCCATGGT 720 ****k DQ183143.1 DQ183141.1 DQ183142.1 AACCGAGGACGTTGGGGTGAGAATGAAAGTGAGGAGAAGGAGCATCCAACGACGGAAAGC 780 AACCGAGGACGTTGGGGTGAGAATGAAAGTGAGGAGAAGGAGCATCCAACGACGGAAAGC 780 AACCGAGGACGTTGGGGTGAGAATGAAAGTGAGGAGAAGGAGCATCCAACGACGGAAAGC 780 DQ183143.1 DQ183141.1 GTAACGACATCTTCACCACCTGAAGTGGTCGAGATCGCGATCAATGATGTCGCCGAGGTG 840 GТААСGACATСТТCАССАCСТGAAGTGGTCGAGATCGCGATCААТGАTGTCGCССAGGTG 840 DQ183142.1 GТААCGACATСTTCАCСACСTGAAGTGGTCGAGATCGCGATCААTGATGTCGCССAGGTG 840 DQ183143.1 DQ183141.1 DQ183142.1 TAGAATTTGTTTTTAAAATATTGCCTGTGTAAATATACTAATAATAGTCACCAATGTC 898 ТАСААТТТСТттTTАAААТАТтссстстстААТАТАСТААТААТАСТСАССААТСТС 898 ТAGAATTTGTTTTTAAAAТАТTGCCTGТСТАААТАТАСТААТААТАGTСACСААТGTC 898
Transcribed Image Text:D0183143.1 DQ183141.1 DQ183142.1 TCGGAGAGACCTATTACTATCATGGTGAAAGTGACACTGATCGTTGCCATTGTGGCTGCT 60 TCGGAGAGACCTATTACTATCATGGTGAAAGTGACACTGATCGTTGCCATTGTGGCTGCT 60 TCGGAGAGACCTATTACTATCATGGTGAAAGTGACACTGATCGTTGCCATTGTGGCTGCT 60 D0183143.1 DQ183141.1 DQ183142.1 CTTGCTATCTCGGCTCACGCAGAAAGAGATTTCAATGAACGACGAGGAAAGGAGAATGCC 120 сттссТАТстссСстСААGСАCGAAGAGAтттCААТСААCGACGAGCAAAGGAGAATGGс 120 120 CTTGCTATCTCGGCTCACGCACGAAGAGATTTCAATGAACGACGAGGAAAGGAGAATGGC DQ183143.1 DQ183141.1 DQ183142.1 AGAGAGAGAGGACAAGGTGGCTTTGAAGGAAGGCCTGGTGGAATGCAGACGGGTAGTCCT 180 AGAGAGAGAGGACAAGGTGGCTTTGGAGGAAGGCCTGGTGGAATGCAGACGGGTAGTCCT 180 AGAGAGAGAGGACAAGGTGGCTTTGGAGGAAGGCCTGGTGGAATGCAGACGGGTAGTCCT 180 DQ183143.1 DQ183141.1 D0183142.1 AGGCAAGATGGTGGACCAATGGGTGGAATGAGGTTCGATGGACCTGAATCTGGTGCCCCA 240 AGGCAAGATGGTGGACCAATGGGTGGAATGAGGTTCGATGGACCTGAATCTGGTGCCCCA 240 AGGCAAGATGGTGGACCAATGGGTGGAATGAGGTTCGATGGACCTGAATCTGGTGCCCCA 240 DQ183143.1 DQ183141.1 DQ183142.1 CAAATGGATGGACGCAGACAAAATGGCGGTCCGATGGGTGGTAGGAGATTCGACGGACCT 300 CAAATGGATGGACGCAGACAAAATGGCGGTCCGATGGGTGGTAGGAGATTCGACGGACCT 300 CAAATGGATGGACGCAGACAAAATGGCGGTCCGATGGGTGGTAGGAGATTCGACGGACCT 300 DQ183143.1 DQ183141.1 DQ183142.1 CGATTTGGTGGCTCCAGACCAGATGGTGCTGGAGGAAGACCTTTCTTCGGCCAAGGAGGC 360 CGATTTGGTGGCTCCAGACCAGATGGTGCTGGAGGAAGACCTTTCTTCGGCCAAGGAGGC 360 CGATTTGGTGGCTCCAGACCAGATGGTGCTGGAGGAAGACCTTTCTTCGGCCAAGGAGGC 360 DQ183143.1 DQ183141.1 DQ183142.1 AGGCGTGGTGATGGAGAAGAAGAAACTGATGCTGCCCAACAAATTGGTGATGGTCTAGGA 420 AGGCGTGGTGATGGAGAAGAAGAAACTGATGCTGCCCAACAAATTGGTGATGGTCTAGGA 420 AGACGTAGTGATGGAGAAGAAGAAACTGATGCTGCCCAACAAATTGGTGATGGTCTAGGA 420 DQ183143.1 DQ183141.1 GGGCCCGGTCAGTTTGATGGTCCTGGACGTCGTCATCATGGTAGAAAGCCTTTCGGAGAC 480 GGGCCCGGTCAGTTTGATGGTCCTGGACGTCGTCATCATGGTAGAAAGCCTTTCGGAGAC 480 DQ183142.1 GGGCCCGGTCAGTTTGATGGTCCTGGACGTCGTCATCATGGTAGAAAGCCTTTCGGAGAC 480 DQ183143.1 D0183141.1 DQ183142.1 СGTСССТТCGGCAGACGCAACСАТАСAGAAGСТСАССAGGGTСАТААТGAGACGGGAGAC 540 CGTCCCTTCGGCAGACGCAACCATACAGAAGGTCACCAGGGTCATAATGAGACGGGAGAC 540 СGTСССТТCGGCAGACGCAACСАТАСAGAAGСТСАССAGGGTСАТААТGAGACGGGAGAC 540 DQ183143.1 DQ183141.1 DQ183142.1 САСССССАТССТСАТСАСААСАAGACCAGAGАTGGAGATCAGGACAGACCAATGTTCCAG 600 CACCCCCATCGTCATCACAACAAGACCAGAGGTGGAGATCAGGACAGACCAATGTTCGAG 600 CACCCCCATCGTCATCACAACAAGACCAGAGATGGAGATCAGGACAGACCAATGTTCGAG 600 D0183143.1 DQ183141.1 ATGAGGCCCTTTCGGTTCAACCCCTTCGGTAGAAAGCCTTTCGGAGACCGTCCCTTCGGC 660 ATGAGGCCCTTTCGGTTCAACCCCTTCGGTAGAAAGCCTTTCGGAGACCGTCCCTTCGGC 660 DQ183142.1 АТСAGGCCCTттсGGTTCAACсссттсGGTAGAAAGCCTTTCGGAGACCGTCCсттссGC 660 D0183143.1 DQ183141.1 DQ183142.1 AGACGCAACGGAACCGAGGAAGGATCTCCCAGGCGTGATGGCСААCСТСGGCCССАТGGT 720 AGACGCAACGGAACCGAGGAAGGATCTCCCAGGCGTGATGGCCAACGTCGGCCCTATGGT 720 AGACGCAACGGAACCGAGGAAGGATCTCCCAGGCGTGATGGCCAACGTCGGCCCCATGGT 720 ****k DQ183143.1 DQ183141.1 DQ183142.1 AACCGAGGACGTTGGGGTGAGAATGAAAGTGAGGAGAAGGAGCATCCAACGACGGAAAGC 780 AACCGAGGACGTTGGGGTGAGAATGAAAGTGAGGAGAAGGAGCATCCAACGACGGAAAGC 780 AACCGAGGACGTTGGGGTGAGAATGAAAGTGAGGAGAAGGAGCATCCAACGACGGAAAGC 780 DQ183143.1 DQ183141.1 GTAACGACATCTTCACCACCTGAAGTGGTCGAGATCGCGATCAATGATGTCGCCGAGGTG 840 GТААСGACATСТТCАССАCСТGAAGTGGTCGAGATCGCGATCААТGАTGTCGCССAGGTG 840 DQ183142.1 GТААCGACATСTTCАCСACСTGAAGTGGTCGAGATCGCGATCААTGATGTCGCССAGGTG 840 DQ183143.1 DQ183141.1 DQ183142.1 TAGAATTTGTTTTTAAAATATTGCCTGTGTAAATATACTAATAATAGTCACCAATGTC 898 ТАСААТТТСТттTTАAААТАТтссстстстААТАТАСТААТААТАСТСАССААТСТС 898 ТAGAATTTGTTTTTAAAAТАТTGCCTGТСТАААТАТАСТААТААТАGTСACСААТGTC 898
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