Question 2. Using the sequences and scoring scheme provided in Question 1, compute the most optimal local alignment using dynamic programming. a) Provide the generated bidimensional array. b) Provide all the alignments obtained with their corresponding scores.
Question 2. Using the sequences and scoring scheme provided in Question 1, compute the most optimal local alignment using dynamic programming. a) Provide the generated bidimensional array. b) Provide all the alignments obtained with their corresponding scores.
Human Anatomy & Physiology (11th Edition)
11th Edition
ISBN:9780134580999
Author:Elaine N. Marieb, Katja N. Hoehn
Publisher:Elaine N. Marieb, Katja N. Hoehn
Chapter1: The Human Body: An Orientation
Section: Chapter Questions
Problem 1RQ: The correct sequence of levels forming the structural hierarchy is A. (a) organ, organ system,...
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Please only solve the Q2 as it is a subpart of Q1
Transcribed Image Text:Question 1. Compute global alignment between the following DNA sequences using dynamic
programming and the scoring scheme given below.
DNA sequences: (1) ATCAGAGTA, (2) TTCAGTA
Scoring function: Match = +2, Mismatch = -1, Gap = -1
a) Provide the bidimensional array obtained for computing the optimal alignment.
b)
Is there more than one possibility of optimally aligning the given sequences?
c) If yes, show all the optimal alignments with their scores. If no, provide the best alignment
obtained with its corresponding score.
pt
Question 2. Using the sequences and scoring scheme provided in Question 1, compute the most
optimal local alignment using dynamic programming.
a) Provide the generated bidimensional array.
b) Provide all the alignments obtained with their corresponding scores.
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