Post-Lab 2 Assignment
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BIO 1A03 Post-lab 2 Assignment – Aemen Obaid
1. Creating Your Standard Curve in Excel
Using the data that you collected in Table 2.7, and the instructions provided in Excel Tutorial #2
(p. 109), create a scatter plot using Excel.
You should only include the data for samples 0I, 5I,
10I, 15I, 20I, and 25I in your standard curve.
Your independent variable is amylase
concentration, and your dependent variable is absorbance. Follow the instructions in the
tutorial to format your graph correctly as a publication quality figure. Add a line of best fit to the
scatterplot. Add the equation of the line and make sure that the R
2
value is visible on the figure.
This graph is your standard curve. (10 marks)
0
5
10
15
20
25
0
0.2
0.4
0.6
0.8
1
1.2
1.4
f(x) = − 0.04 x + 1.09
R² = 0.86
Absorbance Values for Amylase Concentration Standard Curve
Amylase Concentration (µg/ml)
Absorbance (620 nm)
Figure 1. Standard curve created by plotting Amylase concentration against absorbance values.
The line of best fit is y = -0.0439x +1.0871, and the R
2
value = 0.8576.
0
5
10
15
20
25
0
0.2
0.4
0.6
0.8
1
1.2
1.4
f(x) = − 0.04 x + 1.09
R² = 0.86
Amylase Concentration (µg/ml)
Absorbance (620 nm)
2. Determine the concentration of Amylase in your Saliva Samples
The standard curve can be used to determine the amylase concentration of your unknown
samples since you measured the absorbance. The equation of the line in the format y = mx + b,
can be used to calculate the unknown amylase concentration in your saliva. This can be
accomplished by inputting the measured absorbance value of each unknown sample into the
equation of the line and solving the equation to determine the amylase concentration in each of
these tubes. Please remember to factor in the dilution of your saliva sample when calculating
your Amylase conc (mg/ml)
and if done correctly, your
calculated concentration from the
standard curve will be the same value for 10x, 100x and 1000x saliva samples. Please use your
completed curve to determine the concentration of amylase in your unknown saliva samples.
Please show your calculations for each dilution and your final calculated concentration to your
TA. (3 marks)
I could not use my 10x and 100x sample because the colour of the samples didn’t
change when iodine was added; the solution remained yellow. This occurred because in
the 10x and 100x samples, the amylase concentration was too concentrated, resulting in
all of the starch being broken down (iodine had no starch to react with)
The absorbance value of the 1000x sample is negative because it is larger than the y-
intercept on the standard curve (y-int = 1.0871), so it falls outside the scope of the assay.
This means that the amylase became too dilutes and no/very little starch was broken
down, resulting in a high absorbance value (iodine had lots of starch to react with).
The 100x solution was too concentrated with amylase while the 1000 solution was too
diluted to calculate the actual concentration of amylase in the saliva.
Your saliva sample
Amylase Conc (ug/mL)
Amylase Conc (mg/mL)
10x, 100x and
1000x
Y=mx+b
-0.293849
3. Using the completed data Table 2.8 provided by your TA, with both amylase concentration
and self-reported starch consumption from all your lab mates, create a 3-bar graph.
Create as a publication-grade figure using 3 bars (low, moderate, high starch consumption on
the x-axis and amylase concentration on the y-axis) with accompanying error bars. You will be
creating two versions of the same figure. The data will remain the same, but one figure will have
standard deviation error bars and the other figure will have range error bars. Instructions on
how to do this assignment is detailed in Excel Tutorial #3 for Office 365 - Creating a Bar Graph
with Error Bars (p. 119) (10 marks)
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Procedure and data sheet are already given
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topic: Isoelectric Precipitation
Appearance of the mixtures containing casein mixed with different buffer solutions: (a) TestTube 1 containing Glycine-HCl buffer; (b) Test Tube 2 containing Acetate buffer; and (c) Test Tube 3containing Phosphate buffer.
QUESTION:
Based on the given results, what do you think is the isoelectric pH of casein? Briefly discuss your basis for determining it.
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Protein Agarose Gel Electrophoresis
Objectives: At the end of the exercise, you should be able to1. Understand the concepts of protein structures, isoelectric point of amino acids andproteins.2. Understand the principle of separation in protein agarose gel electrophoresis.3. Demonstrate laboratory techniques used in running a protein agarose gel (preparinggels, loading samples with micropippets, and electrophoresis).4. Understand the molecular difference between normal and mutant forms of betahemoglobin in patients with sickle cell disease, and how protein agarose gelelectrophoresis can be used in disease diagnosis.
Comparing Migration Rates of Hemoglobin Isolated from Normal, Heterozygousand Sickle cell anemia Individuals at pH 9.2: Part B: pH 9.2, 1X buffer
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Please calculate the denaturation percentage
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Time remaining: 01:51:42
logy
Remaining Time: 1 hour, 18 minutes, 23 sec
Ooestion Completion Status:
QUES TION
Name the phase of this reaction and Label the diagram
Aote fand I are locations
For the f
bar, press ALT+F 10 (PC) or ALT+FN+F10 (Mac)
BIUS
Paragraph
Arial
Click Save and Submit to save and submit. Click Save All Answers to save a
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Materials - 2021FA-CHM-1O X
Bb 4427577
d-fleet02-xythos.content.blackboardcdn.com/6086c260d7e8f/4427577?X-Blackboard-Expiration=1633143600000&X-Blackboard-Sig
6 / 9
100%
Exercise 1: Standard Curve for Protein Measurements:
A standard curve for protein concentration is often created using known concentrations of bovine serum albumin (protein).
This process is called the Bradford Assay; it is a colorimetric assay. A special reagent turns blue when it binds to amino
acids present in protein. The intensity of the color is best measured with a spectrophotometer (a device for comparing two
light radiations, wavelength by wavelength). In the case of the Bradford Assay the greater the absorbance, the higher the
protein concentration.
A series of tests were performed on some samples and
spectrophotometer:
following measurements were obtained using a
Protein
Concentration
(mg/ml)
Absorbance (A)
0.26
0.098
0.56
0.213
0.383
0.84
1.12
0.473
1.40
0.527
TASKS:
1.
Enter the data into Excel - the…
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Module 5 Week 1 Assignment: Enzymes.
This is a group assignment. You must work with a partner. Please be sure to have joined a group in
Canvas and then upload one file for the group.
The following kinetic data were obtained for an enzyme in the absence of inhibitor (1) or in the
presence of two different inhibitors (2 and 3). The Enzyme concentration was the same in all of the
experiments. Graph these data as a Lineweaver-Burke plot.
Enzyme
mM
Inhibitor 2
[S]
1
Inhibitor 3
2
4
8
12
Enzyme
(1)
12
20
a. Paste a photo of your Linewaver-Burke plot here. Plot all three lines on one graph.
b. Using the date, fill in the following table;
29
35
40
v (umol/ml *sec)
Inhibitor
(2)
4.3
8
14
21
26
Vmax
Km
Apparent Vmax
Apparent Km
Type of inhibition
Apparent Vmax
Apparent Km
Type of inhibition
Inhibitor
(3)
5.5
9
13
16
18
Click or tap here to enter text.
Click or tap here to enter text.
Click or tap here to enter text.
Click or tap here to enter text.
Click or tap here to enter text.
Click or tap…
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Exercise 3
The MTT assay is a widely used assay to study cell viability. It measures cellular metabolic
activity, which serves an indicator of cell viability, proliferation and cytotoxicity. This non-
radioactive colorimetric assay is based on the reduction of a yellow tetrazolium salt (3-(4,5-
dimethylthiazol-2-yl)-2,5-diphenyltetrazolium bromide or MTT) to purple formazan crystals
by metabolically active cells. Viable cells contain NAD(P)H-dependent oxidoreductase
enzymes that reduce the MTT to formazan. The insoluble formazan crystals are dissolved and
the resulting coloured solution is quantified by measuring absorbance at 500-600nm using a
multi-well spectrophotometer. The darker the solution, the greater the number of viable,
metabolically active cells!
Exercise 3.1 MTT protocol
Your colleagues in the School of Biology and Environmental Science discovered an unusual
looking green algae on a recent fieldtrip to Costa Rica. They have provided you with some
extracts from the plant…
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P9-11B The following data on baker's yeast in a particular medium at 23.4°C were obtained in the presence
and in the absence of an inhibitor, sulfanilamide. The reaction rate (-3) was measured in terms of the
oxygen uptake rate Qo, obtained as a function of oxygen partial pressure.
(a) Assume the rate Qo, follows Michaelis-Menten kinetics with respect to oxygen. Calcu-
late the lo, maximum (i.e., Vmax), and the Michaelis-Menten constant KM-
(Ans.: V = 52.63 µL O,/h-mg cells.)
(b) Using the Lineweaver-Burk plot, determine the type of inhibition sulfanilamide that causes the O₂
uptake to change.
Po,
05
05
35
5.0
Qo, (no sulfanilamide)
00
23.5
33.0
375
42.0
43.0
Qo, (20 mg sulfanilamide/mL
added to medium)
Page 428 / 993
0.0.
25.6
30.8
36.4
39.6
40.0
Po₂
oxygen partial pressure, mmHg. Qo, = oxygen uptake rate,
µL of O₂ per hour per mg of cells.
(c) List ways you can work this problem incorrectly.
(d) Apply one or more of the six ideas in Preface Table P-4, page xxviii, to this problem.
Q+
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567write true if the statement is correct, otherwise, change the underlined word/phrase to make it correct. do not use abbreviations please answer all
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III. Problem solving. Show your computations. Answer questions briefly.
A 50.0 ml juice extract is colorimetrically assayed using Nelson's test. One
milliliter (1.00 mL) of the solution and the standard glucose solution (concentration:
1mg/mL) were treated with freshly prepared Nelson's reagent and arsenomolybdate
reagent and then diluted to 10.0 mL separately in properly labeled test tubes.
Absorbance at 480 nm for the standard is 1.702 and for the sample, 0.926.
A. What is the principle behind the assay?
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After three minutes, the concentration of drug Zip in the red blood cells is 10 mmoles l-1. What is the average rate of entry of drug Zip into the red blood cells in units of moles min-1 red blood cell-1 during the first three minutes after placing the red blood cells into the bathing solution? Assume that each red blood cell occupies about 1 x 10-13 liters.
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Question attached
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9:58
←
LTE 43%
PHGY 215 Applied Physi...
Questions:
1. Using Table 3, which contains the normal intracellular ion concentrations for most cells in the body,
calculate the equilibrium potential for each of the four ions for normal intracellular and normal
extracellular ion concentrations. Make sure to show your calculations. Repeat these same calculations,
only this time utilize the hyperkalemia values from Table 1.
Table 3. Intracellular ion concentrations.
lon
Intracellular
concentration (mM)
150
K+
Na*
15
CI
Ca2+
4
.0001
2. Using Table 4, which contains the relative ion permeabilities for neurons and cardiac myocytes at rest,
calculate the resting membrane potentials for both neurons and cardiac myocytes. Make sure to include
calculations for both hyperkalemia and normal plasma ion concentrations.
Table 4. Relative ion permeabilities for neurons and cardiac myocytes.
lon
K+
Na+
Neuron
relative permeability
1
.04
CI-
.45
Cardiac myocyte
relative permeability
1
0
0
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INPUT AND OUTPUT COMPUTATION
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Match the number in the image with the correct name for the lab supply
1
2
♡
AGEN
QIAGEN
QIAGEN
QIAC
RIVCEM
БИЗӘДІС
RNeasy Mini Kit (50)
Cat. No. 74104
Store at room temperature (15-25°C)
WEZAIO
QIAGEN
2
GDIVERM
QIAGL
K (20)
QIAGL
умени
DAIO
QIAG
GAGEN
GIVCEN
QIAGEN
QIAGEN
ИЗОМО
QIAGEN
NEA
QIAGEN
QIAGEN
N
QIAGEN
QIAGE
Buffer W
AGEN
Lysis buffer
45 m
Buffer RPE
Wash buffer
11 ml concentrate
to ustan 5 m Butter R
U
3
clear collection tube
centrifuge tube
pink column (with filter)
PhaseLock tube
pink column (with filter) inside a
clear collection tube
<
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16. Your Excel data graph for Serial Dilution lab:**
16a. Include a clear and labeled graph of DF (x axis) versus Absorbance (y axis). See
box above for expectations and review video tutorial of this Excel work.
Do not graph two of your data points: your blank or your Cuvette #1 (DF=1).
1
Q
A
Multiple Styles
W
S
X
3
E
D
$
4
To
C
R
F
%
5
I
T
V
U
^
6
G
Y
7
H
U
8
J
BN
S
(
9
K
M
X
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Only 13.40
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SOMOGYI-NELSON Method(clinical chemistry)
a. What is the type of blood sample used and how much of it is added to distilled water?
b. How much distilled water was used in the procedure?
c. What are the protein precipitants used and indicate the specific concentration of each?
d. What is the color of the precipitate?
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Q26
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flow chart of purification steps of Beta-fructofruanosidase (Invertase)
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Time left 0:4T:30
estion
In the experiment of amylase extraction from barely seeds, after the second centrifugation- the amylase enzyme will be found in
A
yet
vered
ked out of
Flag
-stion
B
O a. B: Precipitate
O b. A: Supernatant
O c. B: Supernatant
O d. A: Precipitate
ENG E
iSall zh
DELL
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Answer the following question
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1. How do both Hemoglobin and S-adenosylmethionine synthetase form hydrophobic pockets? explain in detail.
2. how does the structure of S-adenosylmethionine synthetase make it resistant to heat denaturation and why, explain in detail
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