Post-Lab 2 Assignment

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McMaster University *

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1A03

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Biology

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Dec 6, 2023

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7

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BIO 1A03 Post-lab 2 Assignment – Aemen Obaid 1. Creating Your Standard Curve in Excel Using the data that you collected in Table 2.7, and the instructions provided in Excel Tutorial #2 (p. 109), create a scatter plot using Excel. You should only include the data for samples 0I, 5I, 10I, 15I, 20I, and 25I in your standard curve. Your independent variable is amylase concentration, and your dependent variable is absorbance. Follow the instructions in the tutorial to format your graph correctly as a publication quality figure. Add a line of best fit to the scatterplot. Add the equation of the line and make sure that the R 2 value is visible on the figure. This graph is your standard curve. (10 marks) 0 5 10 15 20 25 0 0.2 0.4 0.6 0.8 1 1.2 1.4 f(x) = − 0.04 x + 1.09 R² = 0.86 Absorbance Values for Amylase Concentration Standard Curve Amylase Concentration (µg/ml) Absorbance (620 nm) Figure 1. Standard curve created by plotting Amylase concentration against absorbance values. The line of best fit is y = -0.0439x +1.0871, and the R 2 value = 0.8576.
0 5 10 15 20 25 0 0.2 0.4 0.6 0.8 1 1.2 1.4 f(x) = − 0.04 x + 1.09 R² = 0.86 Amylase Concentration (µg/ml) Absorbance (620 nm) 2. Determine the concentration of Amylase in your Saliva Samples The standard curve can be used to determine the amylase concentration of your unknown samples since you measured the absorbance. The equation of the line in the format y = mx + b, can be used to calculate the unknown amylase concentration in your saliva. This can be accomplished by inputting the measured absorbance value of each unknown sample into the equation of the line and solving the equation to determine the amylase concentration in each of these tubes. Please remember to factor in the dilution of your saliva sample when calculating your Amylase conc (mg/ml) and if done correctly, your calculated concentration from the standard curve will be the same value for 10x, 100x and 1000x saliva samples. Please use your completed curve to determine the concentration of amylase in your unknown saliva samples. Please show your calculations for each dilution and your final calculated concentration to your TA. (3 marks) I could not use my 10x and 100x sample because the colour of the samples didn’t change when iodine was added; the solution remained yellow. This occurred because in the 10x and 100x samples, the amylase concentration was too concentrated, resulting in all of the starch being broken down (iodine had no starch to react with)
The absorbance value of the 1000x sample is negative because it is larger than the y- intercept on the standard curve (y-int = 1.0871), so it falls outside the scope of the assay. This means that the amylase became too dilutes and no/very little starch was broken down, resulting in a high absorbance value (iodine had lots of starch to react with). The 100x solution was too concentrated with amylase while the 1000 solution was too diluted to calculate the actual concentration of amylase in the saliva. Your saliva sample Amylase Conc (ug/mL) Amylase Conc (mg/mL) 10x, 100x and 1000x Y=mx+b -0.293849 3. Using the completed data Table 2.8 provided by your TA, with both amylase concentration and self-reported starch consumption from all your lab mates, create a 3-bar graph. Create as a publication-grade figure using 3 bars (low, moderate, high starch consumption on the x-axis and amylase concentration on the y-axis) with accompanying error bars. You will be creating two versions of the same figure. The data will remain the same, but one figure will have standard deviation error bars and the other figure will have range error bars. Instructions on how to do this assignment is detailed in Excel Tutorial #3 for Office 365 - Creating a Bar Graph with Error Bars (p. 119) (10 marks)
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Low Moderate High 0 1 2 3 4 5 6 7 Starch Diet Type Average Amylase Concentration Figure 2: Average Amylase Concentration (mg/mL) based on Starch Diet Type with Standard Deviation. The data bars represent the mean average of each diet category (Low Starch Diet, Moderate Starch Diet, and High Starch Diet). The error bars represent the standard deviation in the data. The sample size of each category is as follows: 8 people for “Low Starch Diet”, 10 people for “Moderate Starch Diet”, and 12 people for “High Starch Diet” Low Moderate High 0 1 2 3 4 5 6 7 Average Amylase Concentration (mg/mL) based on Starch Diet Type with Range Error Bars Starch Diet Type Average Amylase Concentration
Low Moderate High 0 1 2 3 4 5 6 7 Starch Diet Type Average Amylase Concentration Figure 3: Average Amylase Concentration (mg/mL) based on Starch Diet Type with Range Error Bars. The data bars represent the mean average of each diet category (Low Starch Diet, Moderate Starch Diet, and High Starch Diet). The error bars represent the range of the data considering the maximum and minimum values. The sample size of each category is as follows: 8 people for “Low Starch Diet”, 10 people for “Moderate Starch Diet”, and 12 people for “High Starch Diet” 4. What is happening in the amylase reaction tubes when you added liquid from Tube Set 1 to Tube Set 2? Why are some of the Set 3 tubes a darker blue colour than others at the end of the reaction? What causes the tubes to turn blue in colour? (2 marks) Liquid from Tube Set 1 contains amylase, whereas Tube Set 2 contains starch. When they are combined, the enzyme amylase begins to break down the a-1,4 - glycosidic linkages in starch (polysaccharide) into glucose sugar monomers.
Some of the Set 3 tubes turn a darker colour due to the amount of starch that remains in the solution. Iodine reacts with the remaining starch, producing the dark blue colour. The more starch that remains in the solution, the darker blue the solution turns. Starch Diet Amylase concentraion (mg/mL) High 0.73 High 4.41 High 33.9 High 0.513 High 1.78 High 3.14 High 5.77 High 1.67 High 2.21 High 5.31 High 6.23 High 5.98 Low 2.1 Low 0.644 Low 0.376 Low 2.96 Low 1.54 Low 2.07 Low 3.29 Low 1.87 Moderate 4.752 Moderate 0.988 Moderate 1.72 Moderate 1.66 Moderate 1.89 Moderate 0.739 Moderate 1.524 Moderate 0.748 Moderate 4.55 Moderate 5.78 Average Amylase Concentration in High Starch Diet Standard Deviation for High Starch Diet 5.97025 9.037753383 Average Amylase Concentration in Moderate Starch Diet Standard Deviation for Moderate Starch Diet 2.4351 1.85848591
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Average Amylase Concentration in Low Starch Diet Standard Deviation for Low Starch Diet 1.85625 1.009943386 Grade: /26