CHEM 312 Lab Manual_2023-7

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Intermediate Analytical Chemistry CHEM 312 Laboratory Manual Brigitte Desharnais, Cameron D. Skinner Summer 2023 revision Adapted from the 2008 revised version of the laboratory manual. Revised Summer 2023.
2 Table of Contents Prelabs ............................................................................................................................................ 3 Lab Report Instructions ................................................................................................................... 4 Statistics and Data Processing ...................................................................................................... 11 Determination of Trace Amounts of Copper and Zinc in an Aqueous Solution by Atomic Absorption Spectroscopy .............................................................................................................. 14 Determination of Riboflavin by Fluorescence Spectrophotometry ................................................ 21 Determination of Aspartame, Caffeine and Benzoic Acid by High Performance Liquid Chromatography (HPLC) ............................................................................................................... 26 Gas Chromatographic Determination of Isopropanol in a Mixture ................................................ 32 Determination of Ascorbic Acid by Differential Pulse Voltammetry .............................................. 38 Coulometric Determination of Arsenate ........................................................................................ 47 Quantitative Analysis of Citrus Essential Oils by Gas Chromatography Mass Spectrometry .... 52
3 Prelabs: You must be prepared to enter the lab. To that end, you will prepare a prelab document for each experiment to be carried-out. It will have the following sections: Your name & ID Name of the experiment Objectives One paragraph explaining the experimental objectives and general procedure. Underline 5 keywords/ideas relevant to carrying-out the lab. Keywords Prepare one sentence explanations for each of the keywords/ideas Procedures Prepare a step-by-step overview of the procedure(s). e.g. Step 1: obtain sample (record #, dry, weigh 3.0g, record weight) Step 2: prepare stock standard (weigh/record 1.0 g of Zinc, dissolve in 500 mls 10% HNO3, dilute to 1000 ml in volumetric) Step 3: etc… Hazards List known/expected hazards both chemical and physical Prelabs ( as Word documents ) need to be emailed to Chem312@concordia.ca before 9 PM the night before the lab. Put “PRELAB: Experiment #” in the subject, replace the “#” with your experiment #. Only one prelab per email. Failure to do this will bar you from entering the lab.
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4 Lab Report Instructions Late submissions will be penalized 10% per day late. For your all your lab reports, you must use the Word template available on Moodle. All lab reports ( as Word documents ) need to be emailed to Chem312@concordia.ca . Name your electronic files/documents as: Last name_ID number_experiment number (e.g. Skinner_12345678_1) . Notice the following: In the title, each “major” word is capitalized but not the minor words (e.g. “Gas Chromatographic Determination of Isopropanol in a Mixture”). Follow the capitalization found in the table of contents of this lab manual if you have any hesitation; Pages should be numbered; Section titles should be capitalized and bolded. Abstract This should be a concise 1 paragraph summary of your report, approximately 100 words. It should describe the goal(s) of the experiment, the techniques used in the analysis (instrumental and calibration) and the significant findings (LOD, LOQ, number of the unknown and its calculated concentration with confidence interval). Example: In this experiment, a gas chromatograph coupled with a flame ionization detector was used to determine the concentration of ethanol in an unknown aqueous sample. An internal standard calibration was performed using four samples of known concentration. The LOD and LOQ of the method, set at 3 and 10 σ blank respectively, were found to be 0.001 and 0.003 mg/mL. The method was calibrated using a linear regression analysis and the concentration of unknown #1045 was determined to be (0.700 ± 0.005) mg/mL at the 95% confidence level.
5 Introduction The introduction should explain the theory behind the experiment. 1-2 pages should be sufficient (2 pages max) . This includes a description of the theoretical principles behind the instrumentation used and how the instrument itself works. This should show clearly how quantification of the analyte was accomplished. You should also include details on the calibration method used (external standard, internal standard, standard addition) and the appropriateness of choosing this method (its advantage(s)). The introduction should contain no specifics on the experiment itself (e.g. column used, solvent used, analyte treated or results obtained). NEW FOR 2023 There will be no Introduction section to any of the lab reports EXCEPT the “oral” lab report and the electrochemistry lab report (presentation) . For the Introduction section just write “Introduction: Not required” Experimental Procedure This section is intended to briefly describe the experimental procedure that was used to obtain the data. However, since you usually make no changes to the procedure laid out in the lab manual, you can simply cite it and note any changes from the established procedure. Example: As per lab manual (1). Changes to the established procedure: The standards concentrations were changed to 0, 0.2, 0.4, 0.6, 0.8 and 1.0 ppm. Note that the number in parenthesis in the example above refers to the reference number. The full reference of the lab manual must appear in the "Reference" section of your report, under (1). Results This section must include the following: 1) Original data, in a table 2) Treated data, in a table (data after calculations/transformations, if applicable) 3) Calibration graph (including error bars, if possible) 4) Calibration data, in a table (slope and intercept value, with their associated error) 5) Unknown concentration and its associated error (confidence interval) 6) LOD and LOQ
6 Everywhere a calculation is done (e.g. for the treated data, the unknown concentration, its error, the LOD and the LOQ), a sample calculation is required . Building equations in Word documents is quite easy now (Insert/Equation) also, many of the basic equations can be copy/pasted from the formula sheet (Word version available on Moodle is likely to work best, reference…) So ALL sample calculations must be typewritten (no hand-written equations/calculations, yes, you can skip over basic steps in a multi-step calculation. The purpose here is to make sure you’re using the correct equation and variables/values) Tables and graphs should be titled and numbered. Notice, the convention is to put the caption above tables and below for figures. Example: Table 1: Calibration Data for Isopropanol Concentration ( %) Peak Area (mV*min) Ratio Methanol Isopropanol 20 490248 387957 0.791348 25 411197 411094 0.999750 30 411651 480145 1.16639 35 382722 650770 1.70037 Figure 1: Calibration Curve for Isopropanol
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7 Do not forget to put proper labels on your graph axes, and to include units (inside parentheses). Your graph title should not be along the lines of "x vs y". This is chemistry not mathematics. The raw data in the lab book should be photocopied and attached at the end of the lab report. When reporting raw data (e.g. peak area) or treated data (e.g. ratio), think about how many significant digits it is appropriate to show. The precision of the measurement can often help you decide on the appropriate number of significant figures to use. Be aware that thoughtless reporting of data may result in points being deducted. Discussion This section (2-3 pages) should explain the purpose and principles of the experiment, the principles of the method and the treatment of the data as you do it (e.g. Why lithium nitrate was used as a background support electrolyte? Why was a C18 column rather than a C8 column used? Why was the solution sonicated? Why the solutions were filtered using ash-free paper?). Run through the steps and try to explain or justify what needs to be. You should describe how the data was examined (e.g. for outliers) and processed (e.g. transformations and calculations performed). Describe the results of the experiment and compare them to the expected results (if applicable, compare to the theory). You should also discuss the significance of the results. This section should demonstrate your understanding of the experiment and the theory surrounding it. Take the appropriate time to get a good understanding of the experiment before writing this section. Be careful to correctly reference your sources of information. References If you are using a source of information to help you prepare your report, even though you are not quoting this source directly, you must reference it in your lab report. Thus, your textbook and this laboratory manual should be included in the references of all of your lab reports. If you use the same words as the source, the text must be in quotes and referenced. Note that the goal of your lab report is to demonstrate what you have understood, so try to use a limited number of quotes. Paraphrasing of the source demonstrates your understanding better. In either case, you need to put a reference number (inside parentheses, brackets, or superscripted) beside the reported information. Any images, figures, drawings etc. that you have not created also must be referenced.
8 Example: High performance liquid chromatography is widely used because of its "sensitivity, its ready adaptability to accurate quantitative determinations, its ease of automation, its suitability for separating nonvolatile species or thermally fragile ones, and above all, its widespread applicability" (1). It is typically coupled with an ultraviolet detector to allow quantification of most organic analytes (2). You then need to build a “References” section at the end of your lab report, to describe what sources these numbers refer to. Many referencing styles are available and adequate in chemistry. The goal of a reference is to allow the reader to easily find, for example at the library, the document you are referring to. It must therefore contain the information required to do so. Here we chose to demonstrate how to quote using the American Medical Association (AMA) style. If you wish to use another referencing style, you are welcome to do it, but all the necessary information must be present. In general, references for the following require Books: Author 1, Author 2. Title . Edition. Place of edition: Editor; year: pages. Example: James N. Miller, Jane C. Miller. Statistics and Chemometrics for Analytical Chemistry . 6 th edition. Essex: Pearson Education; 2010: 39-45. Chapter of a Book: Author 1, Author 2. Chapter Title. In: Book Title . Edition. Place of edition: Editor, year: pages. Example: Douglas A. Skoog, F. James Holler, Stanley R. Crouch. Atomic Absorption and Atomic Fluorescence Spectrometry. In: Principles of Instrumental Analysis . 6th ed. Belmont, California: Thomson Brooks/Cole; 2007:230-253.
9 Scientific papers: Author 1, Author 2. Paper Title. Journal Title . Year; Volume (Issue or number, if available): pages. Example: Zhi-Min Zhang, Yi-Zeng Liang, Hong-Mei Lu, Bin-Bin Tan, Xiao-Na Xu, Miguel Ferro. Multiscale peak alignment for chromatographic datasets. Journal of Chromatography A . 2012; 1223: 93-106. Website: Author1, Author 2. Title of the web page. Available at: http://webaddress. Retrieved Month Day, Year. Example: Department of Animal Science of Mc Gill University. Mastitits in Dairy Cows. Available at: http://animsci.agrenv.mcgill.ca/courses/450/topics/13.pdf. Retrieved April 24, 2012. Note that the author can also be an organization (department of a university, company, etc.). This lab manual: Brigitte Desharnais, Cameron D. Skinner. Intermediate Analytical Chemistry CHEM 312 Laboratory Manual , Concordia University: Montréal, 2012. Statistics Introduction Document Cameron D. Skinner. Statistics and Data Analysis , Concordia University: Montréal, 2012. If one element is non-available (e.g. the author of a website), simply leave that field out.
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10 There is software to allow you to do nearly automatic reference generation. RefWorks is available to all Concordia Students (see http://library.concordia.ca/help/howto/refworks.php). Zotero is a free Mozilla Firefox plugin (comes with an accompanying Word plugin), allowing you to do easy reference storage and quotation. Word also has an included tool for referencing (References/Insert Citation), but it is a bit longer to use than the others, because you need to enter the source information yourself. Obviously, you can do your referencing manually, but if you plan on continuing your studies in science at the graduate level, this will soon become unmanageable. Please note that lab reports will be examined for evidence of plagiarism including using software.
E XPERIMENT 1 Statistics and Data Processing Purpose: The goal of this experiment is to familiarize yourself with the practice of calibrations, limit of detection, limit of quantification and measurement uncertainty calculation through error propagation. The methods you learn in this lab are to be used for all other Chem 312 labs. Theory: All of the experiments you will be doing in this course will require some form of data analysis. Measurements performed in the laboratory always contain a certain amount of uncertainty (noise or random error, systematic error). When you are calculating the concentration of an unknown based on measurements (calibration curve), you need to acknowledge the existence of this uncertainty and its impact on your prediction of the unknown’s concentration. Any values that you report without the appropriate error treatment will be considered worthless in this course. The theory you need to know to write your lab report (see “Calculations” Section) is available in the “ Statistics and Data Analysis” package available from the Moodle site. This material should also have been covered, in part or in whole, in your class. Your textbook has an extensive chapter on statistics, and introductory statistics are nicely presented in Harris’ textbook (see References for details). NOTE: Check- out the worked example in the “ Statistics and Data Analysis” package available from the Moodle site. You should reproduce this worked example to test to see if you are doing your calculations correctly then move onto the data provided for this lab! Materials, chemicals and instruments: Set of data Spreadsheet program (Excel or other) Procedure: Solution(s) preparation: N/A
E XPERIMENT 1: Statistics and Data Processing 12 Measurements: Your dataset will be provided on Moodle. This data represents typical measurements that you will encounter in many of the labs in 312. If you develop your spreadsheet carefully you will be able to reuse it for all of the other experiments! Calculations: (before beginning these, READ THE STATS MANUAL) Use a 95% confidence level for all tests performed, unless otherwise specified. 1) Plot your calibration data (signal vs concentration). Do not forget to title your graph and your axes. Be sure to include units. Be generous with the plot since it will help you spot outliers in your calibration data! 2) Test for outliers in the replicate data (standards and all samples) using the G test. 3) Eliminate the outliers from your calculations (and plots as needed). Be sure to report which values were eliminated and justify their elimination. 4) Perform a linear regression on the calibration data to obtain the calibration coefficients (slope, intercept, and error Excel will provide many parameters, report only those you use in the calculations below, trim reported values according to significant figures). 5) Calculate the detection and the two quantification limits (see book/lectures for definitions). Do not forget to include units in your calculations and trim reported results. 6) Begin your verification of the calibration method by validating that the calibration check’s average concentration falls within the established acceptance criteria (see dataset for expected concentration and criteria). Failure of the calibration check would invalidate all results in this dataset. 7) Next, verify that the method is producing acceptable results for the average concentrations for the QClow, QChigh. Failure of these samples indicates a problem in sample preparation or the calibration and would invalidate the results in the dataset. 8) Next, determine if there is a significant difference between the established value of the Certified Reference Material (CRM) and your determination. A significant difference indicates a biased analysis in the method and would invalidate the results. 9) Next, calculate the concentrations of the unknown samples, including appropriately trimmed confidence intervals. (This is your best estimate of where the “true” value sits. See the example in the stats manual. This is more than just the value +/- the std. dev.) Lab report: Abstract, introduction (2023: Not required), results, discussion and references sections are required for this lab report. For the “Experimental” section of your lab report, simply write
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E XPERIMENT 1: Statistics and Data Processing 13 that it does not apply here. Hand in your original data in your report. Send your spreadsheet(s) used for calculations to your TA. Clearly explain the purpose of each test you have carried and which conclusion(s) you have reached after performing each of them. References: 1. Harris DC. Experimental Error. In: Quantitative Chemical Analysis . 7th ed. New York: W. H. Freeman; 2007:39 52. 2. Harris DC. Statistics. In: Quantitative Chemical Analysis . 7th ed. New York: W. H. Freeman; 2007:53 77. 3. Cameron D. Skinner. Statistics and Data Analysis , Concordia University: Montréal, 2012
Exhaust Waste Drain Inlet Tube Flame E XPERIMENT 2 Determination of Trace Amounts of Copper and Zinc in an Aqueous Solution by Atomic Absorption Spectroscopy Purpose: The goal of this experiment is to determine the concentration of zinc and copper in an unknown solution by using atomic absorption spectroscopy and the standard addition method. Theory: The atomic absorption spectroscopy instrument measures the absorption of radiation by atoms in order to infer the concentration of these atoms in solution. Beer- Lambert’s law states that the absorbance varies linearly with the concentration of the analyte in solution. Figure 1: Atomic Absorption Instrument
E XPERIMENT 2: Determination of Copper and Zinc by Atomic Absorption Spectroscopy 15 The analyte first needs to be atomized, which means it must be converted to atoms. To do so, it is first converted to a form suitable for atomization. The analyte is initially presented in a liquid solution, typically aqueous. The solution is then aspirated through the inlet tube (see Figure 1). The solution is then broken up into a spray, a process called nebulization. The instrument you will be using uses pneumatic nebulization as a means of sample introduction, although several other types exist (ultrasonic, electrothermal vaporization, hydride generation, laser ablation, etc.). In a pneumatic nebulizer, the gas stream flowing around the tip of the tube will aspirate the solution (Bernoulli effect) and break it up into small droplets. The gas containing the spray will then go through a chamber containing several baffles, which will remove big droplets and leave the smaller ones suspended in the gas. The droplets that impact the baffles will collect at the bottom of the chamber and be drained to waste (see Figure 1). Most pneumatic nebulizers are extremely inefficient and >90% of the sample will flow to waste. The spray is then introduced into the atomizer, in this experiment a flame atomizer, although other atomization methods such as electrothermal or glow-discharge exist. When a flame atomizer is used, the gas flowing through the nebulizer to form the aerosol is the oxidant (air or oxygen). The aerosol is mixed with fuel (natural gas, hydrogen, acetylene) before passing the baffle system. In the flame, desolvation, volatilization and dissociation will occur. During desolvation, the solvent molecules will evaporate, leaving behind a solid or a gas aerosol (depending on the analyte). Solid aerosols will then volatilize to become gaseous molecules. Finally, molecules will dissociate to atoms. The concentration of free atoms in the flame is proportional to the concentration of the analyte in solution. A radiation source produces a light beam at the right wavelength for the targeted analyte. This beam passes through the atomizer (in this case, the flame), where atoms absorb the light in proportion to their concentration. Your atomic absorption instrument uses a hollow-cathode lamp. Other radiation sources, such as electrodeless discharge lamps, also exist. A diagram for a hollow-cathode lamp is shown in Figure 2.
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E XPERIMENT 2: Determination of Copper and Zinc by Atomic Absorption Spectroscopy 16 Figure 2: Scheme of a Hollow-Cathode Lamp (Wikipedia contributors. Hollow-cathode lamp. Wikipedia, the free encyclopedia . 2012. Available at: http://en.wikipedia.org/w/index.php?title=Hollow-cathode_lamp&oldid=464953962. Retrieved May 20, 2012.) The cathode and anode of this lamp are enclosed by glass in a near vacuum (1 to 5 torr). The small amount of gas present is usually neon or argon. The anode is typically made of tungsten, and the cathode is made out of the atom or atoms that you want to analyze (e.g. zinc, copper, magnesium, etc.). A voltage of 300V is then applied to the electrodes, and ionization of the buffer gas starts to occur. This creates a small current of 5 to 15 mA between the electrodes. If the voltage is increased, ions can acquire enough kinetic energy to eject the atoms of the hollow cathode. This process, called sputtering, produces a cloud of atoms. Some of the atoms ejected will be excited by the current and will relax to ground state by emitting radiation in a characteristic spectrum. This radiation obviously has the exact energy needed for the transition of an electron in the analyte atoms and can be absorbed by the analyte atoms in the flame. The attenuated light beam that passed through the flame is directed through a monochromator. This allows isolation of a narrow wavelength band, therefore eliminating interferences such as the light emitted by the flame. The monochromator uses curved mirrors to focus and a grating to diffract light from the entrance slit to an exit slit. At the exit slit only the selected wavelength (over a narrow bandwidth) exits to the detector. The detector used is usually a photomultiplier tube. Atomic absorption spectroscopy is particularly used for single element determination but recent instruments can automatically, and quickly, switch lamps and detection wavelengths for multi- element measurements. In order to calculate the concentration of your unknown, you will be using the standard addition method. In this method, a known amount of the analyte is added to a given quantity of the unknown, and the amount of analyte added is varied from one standard to the other. Therefore, “standard 0”, the one with no added analyte, contains only the amount provided by the unknown. The remaining standards have a concentration of “unk+x”, that is the amount provided by the unknown (unk) plus the known amount added (x). The signal measured (in this experiment, the
E XPERIMENT 2: Determination of Copper and Zinc by Atomic Absorption Spectroscopy 17 absorbance) is plotted against the added analyte concentration. This yields a graph similar to Figure 3. Figure 3: Example of a Standard Addition Calibration Curve The calibration graph has a non-zero intercept, since standard 0 does contain some analyte. The unknown analyte concentration can be found simply by using the absolute value of the x intercept of this graph. Materials, chemicals and instruments: 14 volumetric flasks of 100 mL 2 sets of glass pipettes (10, 8, 6, 4, 3 and 2 mL) Micropipette (100 1000 μL) Micropipette plastic tips 1000 ppm copper solution 1000 ppm zinc solution Distilled water Unknown solution Atomic absorption spectrophotometer
E XPERIMENT 2: Determination of Copper and Zinc by Atomic Absorption Spectroscopy 18 Procedure: Solution(s) preparation: Using the 1000 ppm stock solutions, prepare a 100 ppm solution for copper and a 10 ppm solution for zinc in two 100 mL volumetric flasks. For this operation, you will need to use the micropipette. The solvent used is 1% HNO 3 solution. Each student needs to prepare their own series of 6 volumetric flasks (100 mL). To each of the 6 flasks, add 3 mL of the unknown solution. Then, add sufficient 100 ppm copper solution to make up solutions of 0, 1, 2, 3, 4 and 5 ppm solutions. Do the same thing with the 10 ppm zinc solution to make up solutions of 0, 0.1, 0.2, 0.3, 0.4 and 0.5 ppm solutions. Thus, in all of the flasks but the “Standard 0”, you should have three solutions mixed: your unknown, the zinc solution and the copper solution. The “Standard 0” flask will contain only 3 mL of the unknown solution. Once the three solutions are added in each flask, use 1% HNO 3 solution dilute. Mix well each solution, and be sure to identify them clearly. Measurements: To select the element you wish to analyze, click on the “Lamp” tab, then click on the “Element” box (see Figure 4). A “Select Element” window will appear: select zinc or copper and click ok. The instrument will go through a series of optimizations (setting slit width and wavelength, peaking turret and wavelength, etc.). Wait until this is finished and the screen is no longer displaying an operation. Do not forget to note the wavelength used, as it will be needed for the discussion in your lab report. Figure 4: Lamp Selection
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E XPERIMENT 2: Determination of Copper and Zinc by Atomic Absorption Spectroscopy 19 If this is not already done, put the sample inlet tube in a bottle of distilled water and allow the blank to rinse the system for 15 seconds. To set zero, click on the “Analyze” tab, then on “Analyze Blank” (see Figure 5). The instrument will take three absorbance readings for distilled water, and set this absorbance level as zero. Figure 5: Sample Analysis Remove the sample inlet tube from distilled water and wipe it clean using a Kimwipe tissue. Place it in the next solution you wish to analyze. Click on “Analyze Sample”. When the absorbance readings are done, take down in your lab notebook the three replicate measurements displayed on the screen (see Figure 5). When all samples have been analyzed for the chosen element, return to the “Lamp” tab to change the element to be analyzed. Set zero again using distilled water, and analyze all the samples as specified above. Calculations: Plot the absorbance against the added concentration of copper (0, 0.2, 0.4, 0.6, 0.8 and 1.0 ppm). Using the linear regression equation, determine the true amount of copper in the unknown solution. Do not forget to take into account the dilution of the unknown solution performed during the preparation. Perform a similar analysis for zinc. Do not forget to include LOD, LOQ and uncertainty values.
E XPERIMENT 2: Determination of Copper and Zinc by Atomic Absorption Spectroscopy 20 Lab report: The following questions should be addressed in your lab report. The answers should be included in the body of the text, not as separate sections. Discuss the value of the wavelength used for copper and zinc. To what physical process does this correspond? For nearly every element there are multiple wavelengths that can be used. Discuss what factors go into selecting the wavelength to use experimentally. Different flame structures exist in atomic absorption instruments. The instrument you were using has a long thin flame. What is the advantage of this shape over, say, a round flame (similar to a Bunsen burner)? The flame is used to atomize the analyte. This requires a high temperature flame. Why, in general, don’t we always use the hottest flame type available (an oxygen-acetylene flame is about 500-900 degrees hotter than the air-acetylene you used)? What are the advantages and disadvantages of standard addition calibration in general, and in the context of atomic absorption spectroscopy in particular? Are there advantages, or disadvantages, to using more than three replicate measurements? References: 1. Douglas A. Skoog, F. James Holler, Stanley R. Crouch. Atomic Absorption and Atomic Fluorescence Spectrometry. In: Principles of Instrumental Analysis . 6th ed. Belmont, California: Thomson Brooks/Cole; 2007:230-253. 2. Harris DC. Quality Assurance and Calibration Methods. In: Quantitative Chemical Analysis . 7th ed. New York: W. H. Freeman; 2007:78-95. 3. Harris DC. Spectrophotometers. In: Quantitative Chemical Analysis . 7th ed. New York: W. H. Freeman; 2007:424-452. 4. Harris DC. Atomic Spectroscopy. In: Quantitative Chemical Analysis . 7th ed. New York: W. H. Freeman; 2007:453-473. 5. James D. Ingle, Stanley R. Crouch. Atomic Absorption Spectrophotometry. In: Spectrochemical Analysis . Upper Saddle River, New Jersey: Prentice Hall; 1988:273-306. 6. Kahn HL. Instrumentation for atomic absorption Part two. J. Chem. Educ. 1966;43(2):A103. 7. Lajunen LHJ. Spectrochemical analysis by atomic absorption and emission . Cambridge: Royal Society of Chemistry; 1992.
E XPERIMENT 3 Determination of Riboflavin by Fluorescence Spectrophotometry Purpose: The goal of this experiment is to determine the concentration of riboflavin in an unknown solution using fluorescence spectrophotometry. Theory: Fluorescence and phosphorescence are two categories of photoluminescence. In photoluminescence, a molecule is excited by absorption of photons. The molecule then returns to its electronic ground state by emitting photons. In fluorescence, this emission occurs very shortly after the excitation (<10 -8 s), whereas it is longer for phosphorescence (10 -4 s to minutes). In both cases, the wavelength of emission is longer than the wavelength of excitation. This shift in wavelength is due to loss of energy through collisions with solvent or analyte molecules. Fluorescence is typically observed for molecules with a π system, although other molecules can also produce fluorescence. Solvent, temperature and pH can have a strong effect on the intensity of fluorescence and the wavelength of emission. The emission spectrum of riboflavin excited at 372 nm can be found in Figure 1. Figure 1: Emission Spectrum of Riboflavin Excited at 372 nm
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E XPERIMENT 3: Determination of Riboflavin by Fluorescence Spectrophotometry 22 The peak observed around 375 nm is due to scattered excitation light that the instrument hasn’t blocked successfully. The fluorescence occurs around 525 nm. At low absorbance of the excitation beam (A<0.05), the fluorescence emission intensity will increase linearly with analyte concentration. A detailed explanation of why this is the case can be found in your textbook (Reference 1, section 15A-4). The instrument used to measure fluorescence is called a spectrofluorometer. An excitation source emits light across the full spectrum, which is then filtered by a monochromator to select the excitation wavelength that is transmitted to the sample. The source is usually a low-pressure mercury vapor lamp or a high- pressure xenon arc lamp. The excited molecules emit light in all directions. A second monochromator placed at 90° from the excitation source isolates the desired emission wavelength and transmits it to a transducer. The photomultiplier is the most commonly used transducer, but charge-transfer devices (e.g. CCDs) are also used. Materials, chemicals and instruments: Riboflavin Glacial acetic acid Unknown solution 1 volumetric flask of 1000 mL 7 volumetric flasks of 100 mL 1 set of glass pipettes (10, 8, 6, 4 and 2 mL) 2 glass pipettes of 10 mL Erlenmeyer flask of 2 L Waste beaker Weighing paper Balance Quartz cell Spectrofluorophotometer (Shimadzu RF-5301)
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E XPERIMENT 3: Determination of Riboflavin by Fluorescence Spectrophotometry 23 Procedure: Solution(s) preparation: Prepare 2 L of 5% (v/v) acetic acid in the Erlenmeyer flask. A certain amount of this solution might remain from preceding groups, in which case you can use what is left. Prepare a 10 ppm riboflavin solution by weighing 0.010 g of riboflavin and dissolving it in 1000 mL of 5% acetic acid. Use the volumetric flask for this operation. Be careful, riboflavin takes some time and shaking to dissolve properly. Make sure all of the riboflavin is dissolved before bringing the volume to 1000 mL. Also, make sure to record the exact mass of riboflavin used. Using this 10 ppm riboflavin solution, prepare 100 mL solutions of 0.2, 0.4, 0.6, 0.8 and 1.0 ppm. Use the volumetric flasks for this operation and 5% acetic acid for dilution. The same set of standards is used for both students. Dilute a 10 mL aliquot of your unknown solution to 100 mL with 5% acetic acid. Measurements: Be careful, quartz cuvettes must be handled with care! They are expensive and fragile. The spectrophotofluorometer can be found in room 332.01. Pour the 5% acetic acid blank into the quartz cuvette. Open the instrument cover and place it in the cuvette holder. Make sure to note in which position your cuvette is (e.g. brand name on one side of the cuvette facing you). This position should be used for all of your measurements, in order to reduce variability. Close the cover. On the top right corner of the computer screen, you should see the icons shown in Figure 2. Figure 2: Buttons for Panorama Software Click on the “Go to WL” icon. A “Wavelength Selection” window should appear (see Figure 3). Make sure that the excitation wavelength is 372 nm and the emission wavelength is 523 nm. Click on “Shutter” to open the shutter and let the light pass through. The “Shutter” icon should now show an open shutter (yellow circle in its center). Click on “Autozero” to zero the emission level with the blank.
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E XPERIMENT 3: Determination of Riboflavin by Fluorescence Spectrophotometry 24 Remove the cuvette containing the 5% acetic acid blank from the instrument. Throw the contents in a waste beaker, rinse and dry the cuvette thoroughly. Pour your first standard into the cuvette, and place it in the holder in the instrument. Click on the “Go to WL” icon. Then click on “Read”. The intensity of the fluorescence emission will appear in the small box above the “Read” button. Note this intensity in your lab book. Figure 3: Wavelength Selection Window Read two more times the fluorescence intensity for this first standard, for a total of three intensity measurements. Throw the contents of the cuvette in the waste, rinse and dry your cuvette and repeat the measurement process for all of your standards and unknowns. Calculations: Plot the intensity of fluorescence versus the concentration of riboflavin. Make sure you use the real concentration of riboflavin in your standards, that is, the one calculated from the actual mass of riboflavin you weighed. This should be clearly shown in your lab report.
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E XPERIMENT 3: Determination of Riboflavin by Fluorescence Spectrophotometry 25 Lab report: The following questions should be addressed in your lab report. The answers should be included in the body of the text, not as separate sections. Why do you need to use quartz cuvettes and not plastic ones? Why do, in general, the fluorescence intensities decline with replicate number? Explain the geometry of the instrument (detector vs. excitation source). Why do you need to place the cuvette in the same position for every measurement you take? Why is fluorescence so susceptible to solvent effects (e.g. pH, salts, chlorides etc.) Why is fluorescence more sensitive than absorption (lower detection limits)? References: 1. Douglas A. Skoog, F. James Holler, Stanley R. Crouch. Molecular Luminescence Spectrometry. In: Principles of Instrumental Analysis . 6th ed. Belmont, California: Thomson Brooks/Cole; 2007:399-429. 2. Harris DC. Spectrophotometers. In: Quantitative Chemical Analysis . 7th ed. New York: W. H. Freeman; 2007:424-452. 3. James D. Ingle, Stanley R. Crouch. Molecular Luminescence Spectrometry. In: Spectrochemical Analysis . Upper Saddle River, New Jersey: Prentice Hall; 1988:164-188. 4. Utecht RE. Identification and quantitation of riboflavin in vitamin tablets by total luminescence spectroscopy. J. Chem. Educ. 1993;70(8):673.
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E XPERIMENT 4 Determination of Aspartame, Caffeine and Benzoic Acid by High Performance Liquid Chromatography (HPLC) NB: 2023 this experiment does not require a complete lab report. It will be evaluated in two parts: 1- the Results 2- An oral examination that also includes the GC experiment. Purpose: The goal of this experiment is to determine the concentration of aspartame, caffeine and benzoic acid in an unknown solution using high performance liquid chromatography (HPLC) coupled to a UV-Vis detector. Theory: The purpose of all chromatographic techniques is to separate different species that compose a mixture. In all chromatography techniques, a mobile phase and a stationary phase are used. The mobile phase travels through the stationary phase and carries the analytes with it. The more strongly an analyte interacts with the stationary phase, the longer it will take to elute (exit) from the column. Since each analyte interacts differently with the stationary and mobile phases, they will elute at different times. The time elapsed between the injection of an analyte and its exit from the column is called the retention time. In liquid chromatography, the mobile phase is a liquid. In this experiment, it is a mixture of acetonitrile and aqueous acetate buffer (20:80 v:v). The composition of the mobile phase can be fixed (isocratic elution, as in this experiment), or it can be varied through the chromatographic run (gradient elution). The liquid mobile phase is pushed through a column packed with stationary phase using a high pressure pump (Figure 1). A liquid chromatography column is typically 10 to 30 cm long (Figure 2) and filled with derivatized silica particles. The silanol groups at the surface of these particles are reacted with other groups to provide the surface that interacts with the mobile phase and the analytes dissolved in it. This thin surface layer is the stationary phase. In this experiment, a C18 stationary phase is used, which means that octadecylsilane has been used to derivatize silanol groups on the surface of silica particles to provide R 3 Si-O-Si(OH) 2 -C 18 H 37 . The hydrocarbon chain covers the surface to such an extent that the analytes can usually be assumed to interact only with this (and not the underlying silica). C18 is probably the most common stationary phase used in LC, but other phases such as C8, CN and phenol are also used: a wide variety of columns exist. Liquid chromatography performed on a column packed with a hydrophobic stationary phase (such as C18) is called reversed phase. This is in opposed to normal phase chromatography, where a column with a hydrophilic stationary phase (such as non- derivatized silica) is used. In reverse phase liquid chromatography, the most hydrophobic
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E XPERIMENT 4: Determination of Aspartame, Caffeine and Benzoic Acid by HPLC 27 UV Detector Column Compartment Autosampler Quaternary Pump Degasser Mobile Phases molecules will interact the stationary phase most strongly, and will therefore have a higher retention time. Figure 1: HPLC Instrument
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E XPERIMENT 4: Determination of Aspartame, Caffeine and Benzoic Acid by HPLC 28 Figure 2: Analytical Column (Hi Tech Trader.com. Agilent Zorbax Eclipse XDB-C18 HPLC Column - Product Details. Available at: http://www.hitechtrader.com/detail.cfm?autonumber=84831. Retrieved May 30th, 2012.) When the analyte peak exits the column, it is dissolved in mobile phase. This mixture flows through a UV detector cell, where absorbance is measured. A plot of absorbance vs. time elapsed since injection yields a chromatogram (Figure 3). The area under the peaks is calculated using an integration software. Peak area can then be plotted against concentration, and this calibration curve can be used to quantitate an analyte. Figure 3: Chromatogram (Modified from: Statistical Designs. How to Develop Validated HPLC Methods: Rational Design with Practical Statistics and Troubleshooting Short Courses. 2012. Available at: http://www.statisticaldesigns.com/sc_hplc.htm. Retrieved May 30 th , 2012.) Materials, chemicals and instruments: Aspartame Caffeine Benzoic acid Acetonitrile Aqueous acetate buffer (0.5% (w/v) ammonium acetate and 2% (v/v) glacial acetic acid) Unknown solution, in a 25 mL volumetric flask
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E XPERIMENT 4: Determination of Aspartame, Caffeine and Benzoic Acid by HPLC 29 1 volumetric flask of 100 mL 4 volumetric flasks of 50 mL 1 volumetric flask of 25 mL 1 volumetric flask of 1000 mL 4 glass pipettes of 25 mL 7 beakers of 10 mL 7 luer-lock syringes (3 mL) 7 nylon membrane filters (Progene, 0.45 μ m pores) 7 HPLC vials (2 mL) and their caps HPLC instrument, including a quaternary pump, a UV-visible detector and an autosampler (Agilent 1200 Series) Procedure: Solution(s) preparation: In a volumetric flask, prepare 1 L of the mobile phase, consisting of 20% (v/v) acetonitrile and 80% (v/v) of the aqueous acetate buffer. To a 100 mL volumetric flask, add 40 mg of caffeine, 40 mg of benzoic acid and 200 mg of aspartame. Make sure to note the exact weight added to the flask in order to properly calculate your concentrations. To dissolve all of the analyte, you will need to shake the solution thoroughly. Make sure everything is dissolved before proceeding to dilution to full volume using the mobile phase. This is your most concentrated mixed standard solution. In 50 mL volumetric flasks, prepare 4 serial dilutions (1:1). Thus the first dilution is prepared by aliquoting 25 mL of the most concentrated solution and completing to 50 mL with mobile phase. The next dilution is prepared by aliquoting 25 mL of the first dilution and completing to 50 mL with mobile phase, and so on for the next two dilutions. This should yield five different standard solutions. Identify them clearly (make sure you know which one is the most concentrated and which one is the most dilute). The 25 mL volumetric flask you received contains 5 mL of an unknown solution. Complete to 25 mL using mobile phase. In a 10 mL beaker, pour some of your first standard solution. Using a plastic syringe, draw in about 2 mL of this solution. Screw on a nylon membrane filter, and push the syringe plunger to deliver about 1.5 mL of this solution in a HPLC vial. Close the vial with a cap, and identify it. Repeat this operation for all of your standards, a blank and unknown solutions.
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E XPERIMENT 4: Determination of Aspartame, Caffeine and Benzoic Acid by HPLC 30 Measurements: The following HPLC parameters are used for the production of chromatograms: Injection volume: 25 μ L Flow rate: 1.0 mL/min Elution: Isocratic Solvents: 20% B (acetonitrille), 80% A (acetate buffer) Column: Zorbax Eclipse XDB-C18 (5 μ m, 4.6 x 150 mm) (Agilent) Column thermostat: deactivated Run time: 8.00 min Detection wavelength: 254 nm HPLC runs will be performed in duplicate using the autosampler. The instrument set up will be performed by the lab technician or your TA, but you will assist to them. Once the run is started, there is no need for you to stay: the injection sequence will be performed automatically by the instrument and will last around 2 hours. You will receive your chromatograms the following week. Calculations: Calculate the concentrations of caffeine, benzoic acid and aspartame in your five standards (in μ g/mL). Make sure you use the real concentration of caffeine, benzoic acid and aspartame in your standards, that is, the one calculated from the actual mass you weighed. This should be clearly described in your lab report. Plot the intensity of absorption versus the concentration of caffeine, benzoic acid and aspartame. You should therefore have three different graphs and calibration curves (one for each analyte). From the calibration data, calculate the concentrations of caffeine, benzoic acid and aspartame of your unknown. Make sure you take into account the dilution you performed.
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E XPERIMENT 4: Determination of Aspartame, Caffeine and Benzoic Acid by HPLC 31 Lab report: Part 1: This will be an abbreviated lab report. It is due on the normal due date. Complete the following sections only: title, abstract, results and calculations and references (as appropriate) in the lab report template as per usual. All other sections of the report should be denoted as “Not required” Part 2: Prepare yourself for an oral lab report (see separate instructions on Moodle) but essentially you will be asked general questions on HPLC as well as specific questions about this experiment. The oral report will also cover the GC-TCD experiment (Expt. 5). You will need to schedule a report date with your TA once BOTH experiments are complete. Give some thought to the following questions when preparing for the report (there may be more in the Moodle instructions) Why is it necessary to filter the prepared solutions before injecting them on the HPLC? Why do you use mobile phase to dissolve your samples instead of water or acetonitrile (what would be the consequences on the separation and peak shapes)? What is the order of elution of the analytes and why is this the case? Make reference to the type of interaction with the stationary phase and the molecular structure of the analytes. Calculate plate number and plate height, and discuss the result. Discuss the different chromatograms’ features (baseline, peak resolution, peak symmetry and shape, etc.). Specify average retention times for all analytes. Why would you use column thermostatting? Why is 254 nm used as the detection wavelength? Give some consideration to the mobile phase too. Why would you use gradient elution instead of isocratic elution? In the past, students needed to degas their mobile phase in an ultrasonic bath for 20 minutes. Why is this not necessary anymore? References: 1. Delaney MF, Pasko KM, Mauro DM, et al. Determination of aspartame, caffeine, saccharin, and benzoic acid in beverages by high performance liquid chromatography: An undergraduate analytical chemistry experiment. J. Chem. Educ. 1985;62(7):618. 2. Douglas A. Skoog, F. James Holler, Stanley R. Crouch. An Introduction to Chromatographic Separations. In: Principles of Instrumental Analysis . 6th ed. Belmont, California: Thomson
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E XPERIMENT 4: Determination of Aspartame, Caffeine and Benzoic Acid by HPLC 32 Brooks/Cole; 2007:762-787. 3. Douglas A. Skoog, F. James Holler, Stanley R. Crouch. Liquid Chromatography. In: Principles of Instrumental Analysis . 6th ed. Belmont, California: Thomson Brooks/Cole; 2007:816-855. 4. Harris DC. High-Performance Liquid Chromatography. In: Quantitative Chemical Analysis . 7th ed. New York: W. H. Freeman; 2007:556-587. 5. Pavia DL, Lampman GM, Kriz GS, Vyvyan JR. Ultraviolet Spectroscopy. In: Introduction to Spectroscopy . 4th ed. Brooks Cole; 2009:381-417. 6. Snyder LR, Kirkland JJ, Glajch JL. Practical HPLC Method Development, 2nd Edition . 2nd ed. Wiley-Interscience; 1997.
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Oven Column Keyboard Injection Port TCD Detector E XPERIMENT 5 Gas Chromatographic Determination of Isopropanol in a Mixture NB: 2023 this experiment does not require a complete lab report. It will be evaluated in two parts: 1- the Results 2- An oral examination that also includes the HPLC experiment. Purpose: The goal of this experiment is to determine the percentage of isopropanol (v/v) present in an unknown solution using a gas chromatography with thermal conductivity detection and internal standards calibration. Theory: In gas chromatography, the liquid sample to be analyzed is introduced into the column through a heated injection port (Figure 1) that flash vaporizes it. The temperature of both the injection port and the column must be at least 50°C above the boiling point of the least volatile constituent of the mixture. Thus, thermolabile molecules cannot be analyzed by gas chromatography, because they will degrade before reaching the detector. Once vaporized, the sample goes into the column, carried by the flow of mobile phase. In gas chromatography, an inert gas is used as the mobile phase (usually helium, although hydrogen is gaining in popularity). The column, which is typically around 30 m long, is placed inside of an oven that keeps the temperature stable. The oven temperature must be high enough for the sample to stay in the gas phase. If the temperature is too low, some of the analytes can condense onto the column, ruining the chromatogram and in some cases the column. Figure 1: Gas Chromatograph
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E XPERIMENT 5: Gas Chromatographic Determination of Isopropanol in a Mixture 33 A variety of columns are available for gas chromatography. Almost all GC columns used are fused silica wall-coated open tubular (FSOT). This means that the column is an open capillary made up of fused silica, and that the inside wall of this capillary, made of silica, have been derivatized using the stationary phase. Usually, non-polar molecules are used as the stationary phase, but other options are available as well. When the sample exits the column, it goes through a detector. Several GC detectors are available: electron capture, nitrogen-phosphorus, flame ionization, mass spectrometer, etc. In this experiment, a thermal conductivity detector is used (TCD; see Figure 2). Figure 2: Thermal Conductivity Detector (TCD) (Wikipedia contributors. Thermal conductivity detector. Wikipedia, the free encyclopedia . 2007. Available at: https://en.wikipedia.org/wiki/Thermal_conductivity_detector. Retrieved May 30th, 2012.) The TCD detector box contains a series of fine metallic wire elements. Current is passed through this fine wire, whose resistance depends on the temperature. The temperature, in turn, depends on the heat capacity of the gas exiting the column which surrounds the wire. If species with a high heat capacity exit the column, they will lower the temperature of the wire. By lowering the temperature of the wire, its resistance will also change. By placing a voltmeter across the wire, one can associate changes in voltage to the passage of an analyte through the detector. The sensitivity of the measurement can be increased by measuring the difference in voltage between a reference flow, which provides a reference signal, and the column flow as shown in the above figure. A further enhancement in sensitivity is possible by arranging a pair of these sample/reference elements in what is called a Wheatstone bridge configuration as shown in the above figure. The voltage change from the bridge detector will be proportional to the concentration of analyte passing through the detector. Software is used to integrate the peaks and determine the area under each peak.
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E XPERIMENT 5: Gas Chromatographic Determination of Isopropanol in a Mixture 34 In order to calculate the concentration of your unknown, you will be using the internal standard method. In this method, a constant amount of a species closely related to your analyte is added to all standards and unknowns, before any sample treatment is performed. This species is known as the internal standard. The signal of both the analyte and the internal standard are then measured. In order to build a calibration, the ratio of the analyte signal to the internal standard signal is plotted against the concentration. Table 1 and Graph 1 below illustrate this calibration technique. Notice that the internal standard signal varies even though it should be constant if a constant volume of sample is injected. This can be due, for example, to variations in the manual injection. However, both the analyte and the internal standard signals vary together with injection volume so that the ratio reflects the correct concentration signal as can be seen in the “Ratio” column. From this calibration curve, the concentration of the unknown can be determined. Table 1: Data Illustrating the Internal Standard Calibration Concentration (ng/mL) Analyte Signal (mV) Internal Standard Signal (mV) Ratio 1 1.25 5 0.25 2 1.50 3 0.50 3 3.00 4 0.75 4 3.00 3 1.00 5 10.00 8 1.25 Figure 3: Calibration Curve Illustrating the Internal Standard Calibration
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E XPERIMENT 5: Gas Chromatographic Determination of Isopropanol in a Mixture 35 Materials, chemicals and instruments: Isopropanol Methanol Ethanol Unknown solution 6 volumetric flasks of 10 mL 10 μ L glass syringe Volumetric pipette (1000 5000 μ L) and plastic tips Gas chromatograph (Shimadzu GC-17A) Procedure: Solution(s) preparation: In the 10 mL volumetric flasks, prepare 5 calibration standards of 0% (blank), 20%, 25%, 30% and 35% isopropanol. All standards should also contain 20% methanol. You will need to use a micropipette for this operation. Once the isopropanol and the methanol are added to the volumetric flasks, perform dilution using ethanol. Measurements: The following GC-TCD parameters are used for the production of chromatograms: Oven temperature: 150°C Injector: 220°C Column: Alltech ECONO-CAP TM EC TM -5 (30 m x 0.25 m ID x 0.25 μm) Flow rate: 10 mL/min TCD current: 50 mA The instrument should be started and ready to use. In the GC Software toolbar (Figure 4), click on the blue arrow button (first of the two arrows). The “Single Run Acquisition” window should open up (Figure 5). Fill out the “Sample ID” field (e.g. 20% Isopropanol, Run 1) and the “Data file” field (e.g. 2012-05-17- 01, each injection must have a different data file name). Click on “Start”. Figure 4: GC Software Menu
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E XPERIMENT 5: Gas Chromatographic Determination of Isopropanol in a Mixture 36 Figure 5: “Single Run Acquisition” Window The instrument will equilibrate, and eventually a “Waiting for trigger” message will appear at the bottom of the software window. When this message appears, the instrument is ready for you to inject your sample. Figure 6: GC Keyboard Be careful, the glass syringe needle and plunger are fragile and must be handled with care to prevent bending of the plunger or the needle. Rinse the syringe three times with the first standard solution. Draw in a volume of 1 μ L. Make sure no bubbles are present. Insert the needle in the injection port carefully, while keeping your hand over the syringe plunger (if you don’t “guard” the plunger, the pressure in the inlet will push it out). Softly push the plunger to release the 1 μ L inside the inlet and simultaneously press start on the GC keyboard (Figure 6). The chromatographic run will last 2 minutes and a report will be printed automatically at the end. You can then start another run of the same sample, using the same procedure described above. Try to be as consistent as possible in your manner of injecting samples. While one sample is running, take the preceding data report and calculate the area ratio of isopropanol to methanol (area of isopropanol / area of methanol). The difference between the highest and lowest area ratios for different replicate measurements of a sample should be smaller than 5%. Once you get three chromatograms for your first standard solution fitting this criterion, you can start injecting the next standard. Once all your standards are analyzed, inject your unknowns. They already contain the internal standard (20% methanol), which is why you can simply draw the solution from the bottle and inject it as is. Again, the maximum area ratio difference should be 5% or less.
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E XPERIMENT 5: Gas Chromatographic Determination of Isopropanol in a Mixture 37 Calculations: Do not include your blank as a standard in the calibration since it is impossible to integrate the analyte peaks. Instead, use it to verify that the chromatogram is devoid of peaks at the retention time of the analytes i.e. there is no peak when there is no analyte. Plot the area ratio (area of isopropanol / area of methanol) versus the percent of isopropanol (v/v). From the calibration data, calculate your unknown’s content in isopropanol (in %) and its error. Lab report: Part 1: This will be an abbreviated lab report. It is due on the normal due date. Complete the following sections only: title, abstract, results and calculations and references (as appropriate) in the lab report template as per usual. All other sections of the report should be denoted as “Not required” Part 2: Prepare yourself for an oral lab report (see separate instructions on Moodle) but essentially you will be asked general questions on GC-TCD as well as specific questions about this experiment. The oral report will also cover the HPLC experiment (Expt. 4). You will need to schedule a report date with your TA once BOTH experiments are complete. Give some thought to the following questions when preparing for the report (there may be more in the Moodle instructions) What are the advantages and disadvantages of internal standard calibration? In which context is it usually used? Would it make a difference in the quantification if a volume of unknown other than 1 μL was injected? Consider a small difference, say 0.8 μL and a large difference, say 5 μL. Calculate plate number and plate height, and discuss the result. How does it compare to other, similar, columns? Discuss the different chromatograms’ features (baseline, peak resolution, peak symmetry and shape, etc.). Specify average retention time for all analytes. What advantages are gained by using a temperature gradient during a chromatographic run (instead of keeping it constant, as you did in the lab)? What are the advantages and disadvantages of a TCD detector? Would another detector be better suited for the analytes quantified in this experiment? References: 1. Douglas A. Skoog, F. James Holler, Stanley R. Crouch. An Introduction to Chromatographic Separations. In: Principles of Instrumental Analysis . 6th ed. Belmont, California: Thomson Brooks/Cole; 2007:762-787.
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E XPERIMENT 5: Gas Chromatographic Determination of Isopropanol in a Mixture 38 2. Douglas A. Skoog, F. James Holler, Stanley R. Crouch. Gas Chromatography. In: Principles of Instrumental Analysis . 6th ed. Belmont, California: Thomson Brooks/Cole; 2007:788-815. 3. Harris DC. Quality Assurance and Calibration Methods. In: Quantitative Chemical Analysis . 7th ed. New York: W. H. Freeman; 2007:78-95. 4. Harris DC. Gas Chromatography. In: Quantitative Chemical Analysis . 7th ed. New York: W. H. Freeman; 2007:528-555.
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E XPERIMENT 6 Determination of Ascorbic Acid by Differential Pulse Voltammetry NB: 2023 this experiment does not require a traditional lab report. Instead you will prepare your results and a Powerpoint presentation with voice-over as a lab report/presentation for both electrochemistry experiments. Specific instructions are on Moodle (lab section) Purpose: The goal of this experiment is to determine the concentration of ascorbic acid in an unknown solution using differential pulse voltammetry. Theory: Ascorbic acid can be oxidized to dehydroascorbic acid (Figure 1), with a cell potential (E°) of 0.29 V (vs Ag/AgCl) at pH 4.0. Figure 1: Oxidation of Ascorbic Acid Voltammetric techniques are a group of electrochemical methods which measure the current as a function of the potential applied on an electrode. A reference electrode (such as Ag/AgCl), an auxiliary electrode (e.g. platinum) and a working electrode (e.g. glassy carbon) are used to perform these types of experiments. When a potential is applied to an electrode, the electrochemical reaction occurs only at the surface layer of the electrode, that is, the thin layer of solution immediately adjacent to the electrode. The concentrations of oxidized and reduced species in this layer will governed by the Nernst equation: where E is the potential applied to the electrode, E°' is the standard cell potential, R is the gas constant, T is the temperature (in ° K), n is the mole of electrons exchanged in the reaction and F is Faraday's constant. Following Ohm's law, the current measured at the electrode should be I=E/R,
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E XPERIMENT 6: Determination of Ascorbic Acid by Differential Pulse Voltammetry 39 and the current should increase linearly with the potential applied to the electrode. However, polarization effects modify this relationship at the extremes of the curve. A graph of the current plotted against the potential, also called a voltammogram, therefore shows a sigmoidal curve (Figure 2). Figure 2 shows that as voltage is increased, current reaches a plateau. This is caused by concentration polarization, which means that at these voltages, the rate of transfer of reduced species from the bulk solution to surface layer is not fast enough to allow the current to increase further. Since the rate of transfer of species is proportional to the concentration, the intensity of the current reached by each plateau increases (is more negative) with concentration of reduced species in solution (see Figure 2). (Image: Harris DC. Quantitative Chemical Analysis . 8th ed. W. H. Freeman; 2010, p. 376) Figure 2: Linear Sweep Voltammogram In differential pulse voltammetry, a pulse is superimposed on a linear scan (see Figure 3) of applied potential.
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E XPERIMENT 6: Determination of Ascorbic Acid by Differential Pulse Voltammetry 40 (Skoog DA, Holler FJ, Crouch SR. Principles of Instrumental Analysis . 6th ed. Brooks Cole; 2006, p.743) Figure 3: Waveform of Differential Pulse Voltammetry The values used analytically are the difference in the currents measured when the potential E is applied to the electrode (S1 in the figure) and the current measured when the potential E + step height (usually 50 mV) is applied to the electrode (S2 in the figure). Notice that this is basically the derivative of the linear sweep voltammogram and is called a differential pulse voltammogram (Figure 4) where Δi is plotted against the initial voltage applied (before the pulse). (Skoog DA, Holler FJ, Crouch SR. Principles of Instrumental Analysis . 6th ed. Brooks Cole; 2006, p.743) Figure 4: Differential Pulse Voltammogram As you can see on the linear sweep voltammogram (Figure 2), the slope of the linear portion increases with increasing reduced agent concentration. In the differential pulse voltammogram (Figure 4), this translates to an increased peak height. Therefore, Δi (peak current) is correlated linearly with analyte concentration (look at the relation of [Fe(II)] to the slope on Figure 2).
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E XPERIMENT 6: Determination of Ascorbic Acid by Differential Pulse Voltammetry 41 Materials, chemicals and instruments: 1 volumetric flask of 50 mL 1 glass pipette of 10 mL 1 micropipettor 1 beaker L-Ascorbic acid 0.1 M Acetate buffer (pH = 4.0) Unknown ascorbic acid solution (in a 50 mL volumetric flask) Polishing Alumina Solution Glassy Carbon Electrode Ag/AgCl reference electrode Platinum wire auxiliary electrode Polarographic cell (15 mL) Polarographic cell cap with 4 holes Magnetic stir bar EmStat4S Potentiostat Procedure: Solution(s) preparation: Prepare 50 mL of 3 mM ascorbic acid solution in a volumetric flask. Use acetate buffer to dilute your ascorbic acid. Make sure to note the exact weight of ascorbic acid used. You will receive 2 mL of unknown solution in a volumetric flask. Dilute this solution to 50 mL with acetate buffer. Measurements: This experiment contains many important small steps. Make sure you follow the instructions carefully, because it is easy to go off track. Read these instructions carefully before you go into the lab, so that you will have a clear picture of what you will do. Using the glass pipette, transfer 10 mL of acetate buffer solution into the polarographic cell. Add the magnetic stir bar. Open the Faraday Cage and pivot the stir motor to the right. Bring the cell up from underneath, around the electrodes, and seat on the cell top. Pivot stir motor back under the cell. Reference electrode, auxiliary electrode and gas inlet should already be placed in the appropriate holes in the cap as indicated in Figure 5.
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E XPERIMENT 6: Determination of Ascorbic Acid by Differential Pulse Voltammetry 42 Magnetic Stir Motor Magnetic Stir Bar Polarographic Cell Cell Cap (4 Holes) Gas Inlet Auxiliary Electrode Glassy Carbon Electrode Ag/AgCl Reference Electrode Figure 5: Polarographic Cell Setup Using a micropipettor, add 0.4 mL of your ascorbic acid standard solution in the polarographic cell through the front hole. Toggle the “Purge” and “Stir” switches to ON position. Stir and degas this solution for 5 minutes. Once the degassing step is finished, switch off the purge gas and stir on the cell stand. ***Make sure purge and stir are OFF during measurements***
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E XPERIMENT 6: Determination of Ascorbic Acid by Differential Pulse Voltammetry 43 Shake the polishing alumina solution and put a few drops on the polishing pad placed on the benchtop. Polish the glassy carbon electrode by making light, circular motions on the wet pad for about 60 seconds and rotate the electrode 90º every 15 seconds to prevent uneven wear of the electrode. Rinse well the carbon electrode with distilled water and carefully blot dry using a Kimwipe. Insert the glassy carbon electrode in its hole and connect the electrode to the potentiostat using the alligator clip. Make sure that the bottom of the electrode is in the solution, that no bubbles are present on the electrode surface and that the electrodes do not touch each other. Close the Faraday Cage. INSTRUCTIONS FOR USING PSTrace Software 1. On the Desktop open the PSTrace software. 2. Click “Connect” button to connect to the instrument. Stir Switch Purge Switch
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E XPERIMENT 6: Determination of Ascorbic Acid by Differential Pulse Voltammetry 44 3. Click “Load method” and select “Experiment 6” 4. Click on the GREEN ARROW in the toolbar ***The experiment will start*** 5. When the run is finish, in the Plot area click on Autodetect Peaks command at the top of the plot. 6. The peak height will be visible. Record the height value listed on the top of the peak.
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E XPERIMENT 6: Determination of Ascorbic Acid by Differential Pulse Voltammetry 45 In order to begin another run you just click again on the green arrow. Perform a duplicate run on the same solution. To do so, degas and stir the solution for 2 minutes. When it is done, turn off the gas flow, turn off the stirring, and perform a run as described above. Once the run is complete, find the current peak value, using the same data treatment steps as described above. Perform analysis of a second standard solution. The second standard solution is prepared by adding 0.4 mL of the 3 mM ascorbic acid solution to the polarographic cell. Degas and stir for 2 minutes, then start a run. Perform duplicate analysis, as specified above. Repeat this procedure 3 other times (for a total of 5 standards). To analyze the unknown solution, throw your last standard solution in the waste. Rinse and dry the polarographic cell. Pour the diluted unknown solution (10 mL) in the empty polarographic cell. Degas and stir for 5 minutes, then start a run. Perform a duplicate analysis. Repeat this procedure for the second unknown (second student). Calculations: Plot the intensity of the peak current versus the concentration of ascorbic acid. Make sure you use the real concentration of ascorbic acid in your standards, that is, the one calculated from the actual mass of ascorbic acid you weighed. This should be clearly shown in your lab report.
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E XPERIMENT 6: Determination of Ascorbic Acid by Differential Pulse Voltammetry 46 Additionally, you need to take into account the dilution factor of each standard analyzed. The first standard is 0.4 mL of your 3 mM standard in 10 mL of buffer, for a total volume of 10.4 mL; the second standard is 0.8 mL of the 3 mM standard in a total volume of 10.8 mL, and so on. From the calibration curve built with your standards, you can calculate the concentration of your unknown. Do not forget to take into account the dilution of your unknown solution. Lab report: Part 1: This will be an abbreviated lab report. It is due on the normal due date. Complete the following sections only: title, abstract, results and calculations and references (as appropriate) in the lab report template as per usual. All other sections of the report should be denoted as “Not required” Part 2: You will prepare a PowerPoint presentation covering both this experiment and the Coulometry experiment together. There are two specific PowerPoints on Moodle to help you understand how to structure a Scientific presentation (similar to what is given at a Scientific conference) and how to prepare a PowerPoint with voice-over. They should be found in the “Lab” section of Moodle. The presentation is due one week after the submission of the second electrochemistry abbreviated report (the second Part 1) References: 1. Harris DC. Electroanalytical Techniques. In: Quantitative Chemical Analysis . 7th ed. New York: W. H. Freeman; 2007:348 377. 2. Osteryoung J. Pulse voltammetry. J. Chem. Educ. 1983;60(4):296. 3. Mirceski V, Komorsky-Lovric S, Lovric M. Square-Wave Voltammetry Theory and Application . Available at: http://0-www.springerlink.com.mercury.concordia.ca/content/j45550/?MUD=MP. Accessed June 20, 2012. 4. Douglas A. Skoog, F. James Holler, Stanley R. Crouch. Voltammetry. In: Principles of Instrumental Analysis . 6th ed. Belmont, California: Thomson Brooks/Cole; 2007:716 760.
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3 E XPERIMENT 7 Coulometric Determination of Arsenate NB: 2023 this experiment does not require a traditional lab report. Instead you will prepare your results and a Powerpoint presentation with voice-over as a lab report/presentation for both electrochemistry experiments. Specific instructions are on Moodle (lab section) Purpose: The goal of this experiment is to determine the concentration of arsenate in an unknown solution using coulometry. Theory: Coulometric analysis relies on using the quantity of electricity needed to complete an electrolytic reaction to calculate the quantity of analyte present. The completion of the electrolysis reaction can be evaluated through electrochemistry, but in this experiment we use colorimetric detection. In this experiment, a series of electrochemical reactions are used to quantify arsenate. Iodide (I - ) is first oxidized at the anode to produce the active species iodine: triiodide (I - ) (an iodine molecule complexed with one iodide ion) then acts as an oxidant for arsenate (conversion of As(III) to As(V)): The triiodide is thus converted back to iodide. However, once all of the arsenate is converted, excess triiodide (I 3 - ) starts to build up. Since starch and iodine (present in the excess triiodide) form an intense blue-purple coloured complex, colouration of the solution indicates completion of the electrolysis reaction. As with all electrochemical cell reactions oxidation (of iodide) occurs at the anode and the accompanying reduction (of H + ) occurs at the cathode. Both electrodes are immersed in conductive phosphate buffer. The anode is immersed in a solution containing iodide, starch and arsenate. Charge balance is maintained by movement of ions through the frit present at the bottom of the beaker containing the anode (see Figure 2). Since this is an electrolytic cell, it must be activated by a power source. The circuit used for this experiment (Figure 1) also includes resistances and a voltmeter. The circuit can be closed by a switch.
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E XPERIMENT 7 Coulometric Determination of Arsenate 50 e - Figure 1: Electrical Circuit The quantity of electrons needed to complete the electrolytic reaction can be calculated by using the time elapsed during the reaction and the current: where Q is the charge (in Coulombs, C), I is the current (A) and t is the time (s). And the current passing through the circuit can be calculated using its characteristics: where I is the current (A), U is the potential (V) and R is the resistance (Ω). The quantity of analyte oxidized or reduced can then be calculated using Faraday’s law: where n A is the number of moles of analyte reduced or oxidized, Q is the charge (C), n is the number of moles of electrons lost or gained per oxidation or reduction and F is Faraday’s constant (96 485.3365 C/mol of e - ). - + 3300 Ω 100 Ω 390 Ω Anode (Outer Electrode) Cathode (Inner Electrode)
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E XPERIMENT 7 Coulometric Determination of Arsenate 51 Materials, chemicals and instruments: 1 beaker of 250 mL Frit bottomed beaker 3 beakers of 100 mL Rubber stopper with holes 2 electrodes Electrical circuit, including wiring and resistances Voltmeter Stopwatch 2 glass pipettes (2 mL) Pasteur pipettes Magnetic stir plate Heating plate Starch Anhydrous sodium carbonate Sodium iodide Phosphate buffer (pH 8.0) Arsenate unknown Procedure: Solution(s) preparation: In a 100 mL beaker, add 0.3 g of starch and approximately 10 mL of water. Use a heating plate to bring the solution to ebullition. The solution should be opalescent after stirring. To the 250 mL beaker (outer beaker), add approximately 150 mL of phosphate buffer, 9 g of KI, 0.3 g of Na 2 CO 3 , 2 mL of arsenate unknown, 1 mL of starch (20 drops using the Pasteur pipette) and the magnetic stir bar. Fill the frit bottomed beaker (inner beaker) to the 3/4 mark with phosphate buffer solution. Insert the small green rubber stopper in this beaker, and insert this assembly in the big black rubber stopper. Insert the black rubber stopper (with the green rubber stopper and the inner beaker attached to it) in the outer beaker. The level of solution in the outer beaker should be slightly above the bottom frit of the inner beaker (see Figure 2).
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E XPERIMENT 7 Coulometric Determination of Arsenate 52 Figure 2: Picture and Sketch of Coulometry Setup Measurements: The circuit should already be built for you, but make sure it is properly done using the diagram placed on the bench top. Using the alligator clip, connect the red wire of the switch to the outer electrode, and the black wire from the power supply to the inner electrode. Start stirring the solution. Stirring should be brisk without creating a “vortex” in the beaker. The solution should be stirred during the whole experiment. Switch the power supply on. Switch the voltmeter on by placing the wheel at “2” in the “DCV” section (see Figure 3). Switch the circuit on using the switch. The meter should show a reading of approximately 1 V. Notice that the outer electrode is producing a purple colouration in the solution, which disappears as the solution is stirred. Switch off the circuit when the solution has just entirely turned purple. Remove the black rubber stopper, and pour a small quantity of the purple solution in a 100 mL beaker. This will be used as your colour control. Magnetic Stir Plate Outer Beaker Rubber Stopper Magnetic Stir Bar Inner (Frit Bottomed) Beaker Outer Electrode Inner Electrode
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E XPERIMENT 7 Coulometric Determination of Arsenate 53 Figure 3: Voltmeter Configuration Add exactly 2 mL of arsenate unknown. Switch on the circuit and start the stop watch simultaneously. Note down the voltage displayed on the voltmeter. Place your colour control beaker right beside the outer beaker, and when the colouration in the outer beaker becomes the same as your colour control, stop the stopwatch and turn off the circuit simultaneously. Note the time elapsed during the completion of the electrolysis reaction. Add again 2 mL of arsenate unknown. Repeat the electrolysis procedure, monitoring again the voltage and the time elapsed. Repeat this procedure until you have at least three time data where the difference between the highest and the lowest values is less than 5%. Calculations: Using the equations presented in the theory above, calculate the quantity of arsenate reduced after each unknown addition (in mol). From there, you can easily calculate the concentration of arsenate in the unknown. Be careful while choosing the value of the resistance you use for this calculation (think about over which resistance the voltage is measured). Lab report: Part 1: This will be an abbreviated lab report. It is due on the normal due date. Complete the following sections only: title, abstract, results and calculations and references (as appropriate) in the lab report template as per usual. All other sections of the report should be denoted as “Not required” Part 2: You will prepare a PowerPoint presentation covering both this experiment and the DPV experiment together. There are two specific PowerPoints on Moodle to help you understand how to structure a Scientific presentation (similar to what is given at a Scientific conference) and how to prepare a PowerPoint with voice- over. They should be found in the “Lab” section of Moodle.
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E XPERIMENT 7 Coulometric Determination of Arsenate 54 The presentation is due one week after the submission of the second electrochemistry abbreviated report (the second Part 1) References: 1. Douglas A. Skoog, F. James Holler, Stanley R. Crouch. Coulometry. In: Principles of Instrumental Analysis . 6th ed. Belmont, California: Thomson Brooks/Cole; 2007:697 715. 2. Harris DC. Electroanalytical Techniques. In: Quantitative Chemical Analysis . 7th ed. New York: W. H. Freeman; 2007:348 377.
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E XPERIMENT 8 Quantitative Analysis of Citrus Essential Oils by Gas Chromatography Mass Spectrometry Purpose: The primary purpose of this experiment is to identify and quantitate several components of citrus essential oils Theory: Essential oils are the generic term applied to the chemical components extracted from a natural source, usually from fruits, flowers, leafs or nuts. They typically have strong flavours and/or fragrances characteristic of their source. These essential oils find a wide variety of uses, especially in cooking (vanilla, orange, almond, peppermint, etc.), the fragrance and aroma therapy industry (rose, citrus, bergamot etc.) and other industries (c itronella, peppermint, lemon/orange, clove, etc.). Given their use in fragrance/aroma therapy, and their economic importance, it is critical to have a viable method of measuring the key components of essential oils. The fact that, by definition, essential oils are fragrant implies that many of the components are volatile at relatively low temperatures. As a natural product, it is also probable that they will be a complex mixture of different species with many of them being closely related compounds. Taken together, these two facts suggest that the analytical technique must be capable of measuring many different, but similar, species. Gas chromatography is an ideal technique for separating complex mixtures into its components due to its high resolving power (each component appears in the chromatogram as a separate peak) as demonstrated in the following separation of 30 different species. GC multi-residue pesticide standard with 30 components. Image taken from: http://www.restek.com/chromatogram/view/GC_FS0605/prod::41958 , September 2017
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E XPERIMENT 8 Citrus oil by GC-MS 55 However, achieving a complete separation is not sufficient (see “Purpose”) since it can be extremely difficult to identify the components from the chromatogram alone, especially in a complex natural product. There can also be overlapping (unresolved) peaks, even with high resolution separations. To provide unambiguous identification of the components of a mixture it is also necessary to obtain molecular information. This is best done using mass spectrometry as explained more completely below. For these reasons, this experiment will use GC-MS. Basics of Gas Chromatography In successful gas chromatography (GC) the analytes MUST be vaporized. This means they need to be reasonably volatile (bp less than 250-300 C usually) and stable at the elevated temperature of the oven. In chromatography the analytes partition between the mobile phase (MP) and the stationary phase (SP) (i.e. there is an equilibrium process where the analyte moves into/out of the MP and into/out of the SP). Therefore, both the MP and the SP must be reasonably good solvents for the analyte(s). While the analyte is in the MP it is carried/swept down the column towards the detector, when the analyte is in the SP it is, effectively, stationary. Depending on the type of MP, type of SP and the available energy (temperature in GC) different types of molecules will have differing equilibrium points and therefore spend different amounts of time in the MP and SP. The analytes that have high energies AND/OR low affinity for the SP spend little time in the SP and consequently progress down the column quickly. Analytes with low energy (high bp) AND/OR high affinities for the SP will spend a large fraction of their time in the SP and will progress down the column slowly. Therefore, the order of emergence (and detection) from the column depends on the analyte’s interactions with the MP, SP and its energetic requirements (thermodynamic properties). In GC we intentionally use an inert gas as the MP so the (chemical) interaction with the MP is uniform for all species. Therefore, it is only the analyte’s interaction with the SP and the energetic (thermodynamic) properties that give rise to the separation. When choosing a GC column it is critical that the analyte(s) be capable of interacting with the SP (otherwise…). To that end, there are a wide variety of commercially available columns with different SP’s. The most general property to select from is the polarity of the SP which may run from extremely non-polar (hydrocarbon/waxes) through to highly polar (glycols, amines, acids). Once the column (and therefore the SP) is chosen the only remaining variable to control the separation is the energy available to alter the equilibrium point of the analyte(s). In GC this is controlled via the temperature that may be altered during a separation to optimize the separation (a lower temperature maximizes the interactions with the SP and therefore increases retention and increases separation of closely related species, increasing the T reduces interaction and therefore reduces retention and improves overall separation time do you really want a 14 hour long separation?). A well designed separation method (a relatively long column, a carefully chosen SP and precise temperature ramp program) achieves good separation of analytes from each other and non-analyte components while still being relatively fast. Chromatography is a powerful tool for separating complex mixtures (hopefully) into individual components that can be measured and quantitated BUT unless there is some particular insight, or foreknowledge, there is no way of knowing the identity of all of the peaks in a chromatogram. In some instances it is possible to identify species by adding (spiking) a small amount of the purified analyte into a sample and observing which chromatographic peak increases but even this isn’t a guarantee of identification since several species
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E XPERIMENT 8 Citrus oil by GC-MS 56 can elute from the column with the same retention time. This co-elution problem is more prevalent in complex samples such as natural products. What is needed is a detector that can provide molecular information mass spectrometry. Basics of Mass Spectrometry The analyte molecule(s) are neutral while undergoing chromatography however, they must be charged (ionized) to be successfully analysed in a mass spectrometer. There are a wide variety of ionization methods available but in GC-MS the most common is by electron impact. As the gas, containing the analytes, emerges from the column it passes through a relatively high energy electron beam (usually about 70 eV). The majority of molecules are not impacted by the electrons and are therefore undetected, however, some fraction are struck by an electron which causes ionization via extraction of one of the molecule’s electrons. This results in a molecular ion (cation) with the molecule’s original mass (the electron has such a small mass it is negligible). This molecule is called the parent ion. In addition to the formation of the parent ion, some electron impacts occur such that chemical bonds can be broken (most chemical bonds require about 4-8 eV and the ionizing electron has 70 eV) resulting in ions that undergo rearrangement to produce fragment ions. During these rearrangements, thermodynamically favored (i.e. reasonably stable) structures are favored, as opposed to just any old structure. These fragments will have a mass that is lower than the parent ion and more importantly they will be characteristic of the parent ion’s structure. Thus analysis of the fragmentation data, both the masses AND the relative intensities, reveals significant information about the parent ion and can be used to unambiguously identify the parent ion (molecule). For example, below is the GC-MS mass spectrum of two nearly identical species the only difference is the ring closure bond. The parent ions have, as expected, identical masses but, the fragmentation data differs since the ring alters the types of fragment ions that were produced (243, 258 vs 246 Da) and the intensities (at 271, 299 Da etc).
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E XPERIMENT 8 Citrus oil by GC-MS 57 O H O Mass spectra of delta-9-tetrahydrocannabinol and cannabidiol. Mass spectra are usually scaled to the maximum ion intensity and the x-axis is in mass/charge units (Da). All the ions produced in electron impact ionization carry a +1 charge. Given that the parent ion appears at the molecular mass and that the highly structure dependant fragmentation pattern (masses and intensities) is reproducible it is possible to build a database/library of mass spectra that can be used to identify species in samples. In some instances the identification will be unambiguous but, in many cases the database search will provide a list of potential species and the analyst will need to provide the final identification by spiking the sample with the pure analyte. Basics of the method of Internal Standards A common problem faced in analytical chemistry is the potential for uncontrolled losses/gains of analyte during sample preparation and changes of instrument sensitivity during analysis. These problems will result in signals (measurements) that do not accurately reflect the actual concentration of the analyte(s) in the original sample. These problems can be largely addressed by including a known amount of internal standard (IS) in the sample (and standards too). The IS needs to match the analyte(s) physio-chemical behaviour as closely as possible in order to also experience the same losses/gains throughout the preparation/measurement processes. If MS detection is employed, deuterated analogs of the analyte(s) make the perfect IS since delta-9-Tetrahydrocannabinol 100 299 231 314 271 50 41 243 91 55 67 81 115 174 258 147 193 217 0 60 90 120 150 180 210 240 270 300 330 (swgdrug) delta-9-Tetrahydrocannabinol H O O H Cannabidiol 100 231 50 0 43 55 67 77 60 91 90 107 121 120 174 147 150 193 207 246 180 210 240 271 285 270 299 314 300 330 (swgdrug) Cannabidiol
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E XPERIMENT 8 Citrus oil by GC-MS 58 they have identical physio-chemical behaviour as the “light” version of the analyte but can be readily distinguished from the analyte based on the additional mass from the deuterium. In practice, the same amount of IS is added to all samples, blanks and standards and provides a constant reference signal/measurement. To determine the concentration of the analyte(s) the ratio of analyte signal to IS signal is used for all calibration and concentration calculations (i.e. take the ratio of signals then treat this ratio as your “new signal” and proceed as if doing the usual external standards calibration) In the event of any losses/gains both the analyte(s) and IS are changed by the same proportion which does not affect the ratio and therefore the quantity determined (neat huh?) Calibrating from scratch In this lab you will prepare your standards from scratch i.e. you will need to determine the range of concentrations needed to calibrate. The general rule is that, ideally, the unknown should fall into the center of the calibration standards. However, without knowing the concentration of the analyte(s) a priori it is difficult to prepare the correct standards. To address this it is necessary to perform one measurement (separation) of the unknown and one measurement of a standard at a known concentration (usually at the best guess of the concentration of the analyte). From the standard measurement it is possible to establish a ROUGH value for the sensitivity (signal/unit of concentration). Use this value and the measured signal from the sample to estimate the concentration in the sample. Round this value to a convenient value to facilitate preparation of the standards (i.e. if the [ ] = 62 ppm round it to 50 and make your standards in multiples of 50 ppm). Prepare standards that will surround the sample usually aim for ≈ ¼, ½, 1, 2, 4 X the sample concentration. For example. If your chromatograms looks like: Pure standard at 350 ppm Rough concentration in sample: [sample] Signal sample / sensitivity = 3500/13000 x 350 ppm = 94.23 100 ppm Prepare your middle standard at 100 ppm Sample at XX ppm Signal sample 3500 Signal std 13000 sensitivity 13000/350 (ions/s)/ppm Analyte
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E XPERIMENT 8 Citrus oil by GC-MS 59 Materials, chemicals and instruments: Procedure: Overview: you will be provided a sample of lime peel. Add a known amount of deuterated IS and extract the essential oils using methanol. Separate this sample by GC-MS in an initial separation. Your TA will assign you an analyte to quantitate and provide you with chromatographic information necessary to find the analyte in the sample chromatogram. Verify the identity of the analyte, estimate its concentration, prepare calibration standards (including IS) and calibrate the instrument. Measure the sample and determine the concentration of the analyte in your sample. Glassware and Chemicals 50 mL beaker 10 mL graduated cylinder Methanol 7 cm Whatman filter paper Dichloromethane Micropipette (2 20 μL) Anhydrous sodium sulfate Micropipette (20 200 μL) Diluted D -linalool (Internal standard) Micropipette (200 1000 μL) Vial 0.2 g of grated whole lime flavedo Filtration funnel Short Pasteur pipette GC vials Analytical balance GC-MS Procedure Part 0: Already done for you The lime will have already been washed with soap to dewax the peel and just the flavedo (the exterior, oil rich part, none of the white pith) will have been grated, alliquotted (≈0.2 g) and frozen at -80 C. Removal of the flavedo by grating. Note no pith should be included.
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E XPERIMENT 8 Citrus oil by GC-MS 60 Part I: pipetting exercise with DCM You will use methanol and dichloromethane (DCM) throughout this experiment. They are very low viscosity and high volatility solvents so that solvent losses, and losses during transferring operations (pipetting) are likely to constitute the major source of error. Use a 100 μL pipette and draw in 100 μL of water and hold the pipette vertically for 10-15 seconds. Note if any of the water is expelled/lost from the pipette. Repeat the above with Methanol and DCM Consider these results when transferring and pipetting during the remainder of the experiment. Preparation of DCM solvent Prepare the DCM solvent by dissolving 100 μL of the internal standard into 50 ml of DCM using a volumetric flask. Extraction of essential oils Record the exact mass of the glass vial containing the grated whole lime flavedo including the cap. Add 7 mL of methanol and 100 μL of diluted D -linalool (internal standard), then securely close the cap of the vial. Shake the glass vial gently a few times before opening the cap to release any pressure buildup. Continue with this process for 5 minutes. Add approximately one gram of anhydrous sodium sulfate (kept in a desicooler) to the glass vial and allow to dry for 5 min to remove any water. Filter the solid-liquid mixture by gravity filtration and collect it in a 50 mL beaker. Rinse the vial with 3 mL methanol and use it to rinse the filter paper. Record the accurate mass of the cleaned and dried glass vial with cap to determine the mass of the grated flavedo used for extraction. Prepare 2 samples for injection on the GC-MS by diluting the methanol extract. To dilute, transfer 10 μL of the methanol extract into each GC vial and add 990 μL of dichloromethane in each. SEAL THE VIALS CAREFULLY the solvents are volatile! Measurement of sample signal (initial run) Place your sample vials in the auto-sampler, verify the position numbers On the computer screen double click “Chromeleon 7” to open the main page of the software. When the page opens, click on “Data” shown on the lower left side of the screen. Double-click CHEM 312 and select “Experiment #8” (or any number you would like to give to the experiment) In this window, click on “Click here to add a new injection”. The software will introduce a new line at the bottom. Enter a new “Name” for your sample, the “Position” of ONE of your vials in the autosampler and leave the rest unchanged. Press on “Save” and then “Resume” to start the run. It might take 5 to 10 minutes for the instrument to adjust itself to the proper temperature and flow rate of the carrier gas. When ready, the LED light “RUN” on the GC instrument will turn blue and the sample will be injected. The run takes 15 min.
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E XPERIMENT 8 Citrus oil by GC-MS 61 Preparing your calibration standards IMPORTANT ASK YOUR TA FOR ANY MODIFICATIONS TO THIS SECTION Your TA will assign an analyte for quantitation, collect a chromatogram from this standard, overlay the initial sample separation and the standard chromatogram to identify the analyte in the sample chromatogram. Use the MS data to verify the identity of your analyte (compare the MS from both…). Use the standard chromatogram data and its concentration to establish the (approximate) sensitivity. Use the results of your initial run and the sensitivity to estimate the analyte concentration in the sample. Using the known concentration of the provided stock (usually in the ballpark of 10X the most concentrated calibration standard) transfer appropriate volumes to produce calibration standards that are: 0 (a blank), 4, 2, 1, 0.5, 0.25 times the estimated sample concentration in 6 volumetric (10 ml) flasks. (should be about 4000, 2000, 1000, 500 and 250 μL transferred, set the pipette to 1000 μL for the more concentrated standards and 250 μL for the last two think about why…). Dilute the blank and standards to the 10 ml mark with DCM containing the IS. Prepare the standards for injection by transferring 1 mL to each of the GC vials. BE SURE THE VIALS ARE SEALED Collecting calibration and sample data Your two sample vials should already be in the auto-sampler, add the 6 standards and note their positions in the rack. Run the samples and standards (see above for instructions). Calculations: Recall that this is the method of internal standards. Use linear regression to determine the calibration equation. Determine the true concentration and confidence interval of the analyte (μg/g) in the peel. Determine the LOD, LLOQ and ULOQ Lab report: The following questions/points should be addressed in your lab report. The answers should be included in the body of the text, not as separate sections. Why is it necessary to dry the extract? Why is it best to have the calibration standards bracket the unknown? Why is the blank included in the calibration set (what do you expect in a blank, what did you actually observe)? There are many options for IS’s (see the book), why are deuterated IS’s preferred over analogs of the analyte? What determined the order of elution? Does the MS affect the separation? Demonstrate that you have correctly identified the targeted analyte using the information available to you. Identify the major peaks in the chromatogram based on their mass spectra. Compounds known to be found in citrus essential oils (mostly lemon but many should also be found in lime), in no particular order.
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E XPERIMENT 8 Citrus oil by GC-MS 62 Myrcene α - Thujene Octanal α Pinene, β - Pinene α -Phellandrene, β -Phellandrene Sabinene 3-Carene Heptanal Nerol Citronellal p-Cymene Terpinen-4-ol δ -Limonene γ -Terpinene, α -Terpinene Terpinolene Linalool Nonanal α -Terpineol Decanal cis-3,7-Dimethyl-2,6-octadien-1-ol Neral Geraniol Geranial Nonyl acetate Citronellyl acetate Neryl acetate Geranyl acetate Lauric aldehyde trans- α -Bergamotene β -Bisabolene Camphene References:
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E XPERIMENT 8 Citrus oil by GC-MS 63 Appendix: Software To open the software and check the instrument parameters 1) On the desktop, double-click on the “Chromeleon 7” Software. The software main window will appear. 2) On the lower left corner of the screen, click on “Data”. 3) In the list under “Data”, double-click on the folder “Summer 2017”. Select “orange oil”. 4) Place your oil vial sample into the auto-injector. Look at what slot position it is. 5) On the lower left corner of the screen, click on “Instrument”. A window with options and parameters to the machine and the conditions of the machine are displayed. 6) Under the “Filter” tab, select both boxes: TIC and +c EI Full ms[50.00-300.00]
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E XPERIMENT 8 Citrus oil by GC-MS 64 7) Under “ISQ1601519” tab, make sure the parameters of the instrument are as followed: - MS Transfer Line temp: 260 - Ion Source Temp: 275 - Electron Energy: 70.0 [eV] 8) Under “Sampler” tab, make sure the parameters of the injection volume is 0.1μL. For the position number, select the number where your sample is placed.
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E XPERIMENT 8 Citrus oil by GC-MS 65 To create a file for injection 1) On the main window, click on “Click here to add a new injection”. A row will appear. 2) Fill in the slots as followed: a. Title: Give a name for your essential oil sample (Example: [YourInitials] Lime Oil); b. Type: Unknown; c. Volume: 0.1; d. Position: the slot number where your sample is placed (1 to 8); e. Other parameters are unchanged. Repeat steps 5 and 6 for other injections (make sure to select the right vial positon number if more than one vial is being injected and analysed). Save your new injection file by clicking on “Save”, at the top of the main window.
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E XPERIMENT 8 Citrus oil by GC-MS 66 3) Click on “Resume” to start the run. It may take some time for the instrument to adjust itself to the proper temperature and flow rate to start the run. On the GC, the LED light on the “Run” sign will turn blue, and the auto-injector will start moving and injecting. To analyse the chromatogram 1) When the sample is running, click on the “Data” tab, then double click on the small chromatogram picture of your sample run. 2) The tab “Data Processing” is selected in a new window (at the lower left corner). This is where you will see your chromatogram. At first you may not see it, because the instrument is still preparing for separation (you may see a red writing on the “Data Processing” screen). When the peaks appear, click on the F5 button to refresh the chromatogram every 2-3 minutes. The run will take 14 minutes, and then will see your chromatogram like so:
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E XPERIMENT 8 Citrus oil by GC-MS 67 3) To zoom in on your peaks, select a portion of the chromatogram by holding the left-button and dragging the mouse to form a blue rectangle. The selected blue portion will zoom in. *To zoom out, bring your mouse to the lower left corner of the chromatogram screen and a button will appear. Click on that button to zoom out. Print the chromatogram by holding the buttons Ctrl + P, choose the printer Samsung Driver and click OK.
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E XPERIMENT 8 Citrus oil by GC-MS 68 4) On the “Layout” tab at the top of the software window, select on “Time Spectra” at the top right. 5) Chose a peak you want to analyse and identify, and select a time frame of the peak by left-clicking and dragging to mouse inside the peak. A mass spectra will appear under your chromatogram. 6) Right-click on the mass spectra, select “Spectrum with NIST”. A new window with the mass spectra, molecular structure and list of possible compounds will appear.
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E XPERIMENT 8 Citrus oil by GC-MS 69 7) Identify the peak by mass fragmentation and choose the compound that is most likely present in the essential oil (use reference list for help). Close the window by clicking “X” This is how you can identify the compounds manually. *To identify the peaks using the software, click on the chromatogram. Under the “Data Processing Home” tab, click on “Interactive Results”. A new small window under the chromatogram will appear. Click on “Library Search” under the new window, and you will see three lists of high percentage possible compounds for each peak on your chromatogram. Chose the compounds that you think represents best the peak. You may print this table by clicking on the table and hold Ctrl + P and print (with the Samsung printer). Identify each peak.
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70 E XPERIMENT 8 Citrus oil by GC-MS
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8) On the Layout tab, click on “Delimiters”. Double-click on a peak until it turns pink. Right-click on that peak, and select “Peak Properties”. 9) A small window with the properties of the peak will appear. Write down the retention time, the name of the peak and its area.
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