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1
CHEMISTRY 441A
FINAL EXAM
SET A
Dec 14, 2017
S Manandhar
N
ame: ________________________________Student ID#: ____________________________
Instructions:
1.
DO
N
OT
begin the exam until instructed to do so.
2.
SWITCH OFF
your phones.
3.
Make sure there is a total of
12 pages
.
4.
Write your
N
ame
AND
Exam number
(A or B) on your
Scantron.
5.
When finished,
place Exam sheet and Scantron and
return all materials to the instructor.
Summary of points:
1.
Answer on Scantron
Section A
(Q# 1….60)
(60 Points)
2.
Answer on the Exam Sheet
Section B, C, and D
(Q# 61-90)
(40 Points)
3.
Answer on the Exam Sheet
Section E
(Q# 91-93)
(6 Points)
4.
TOTAL 100 + 6 points
A
B
______
C
______
4
T
O
T
A
L
Jerry
Litteral
694205318008
1000
Shanna
2
SECTION A – Please, answer these questions on Scantron (1x60 = 60 points).
1.
In the figure below, where is a hydrogen bond acceptor located?
a)
B
b)
C
c)
D
d)
A
2.
)RU $73 ±VKRZQ EHORZ²³ FOHDYDJH RI WKH ERQG EHWZHHQ BBBBBBBBBB KDV WKH ODUJHVW ǻ* ƍ
.
a)
adenine and ribose
b)
ȕ SKRVSKDWH DQG Ȗ SKRVSKDWH
c)
Į SKRVSKDWH DQG ȕ SKRVSKDWH
d)
ULERVH DQG Į SKRVSKDWH
3.
All of the following are important for enzyme-substrate interactions EXCEPT
a)
hydrogen bonds.
b)
van der Waals interactions
c)
ionic interactions.
d)
covalent bonds.
4.
When a protein folds in an aqueous solution, which of the following is correct?
a)
A mixture of polar and non-polar amino acids is found in the interior of the protein.
b)
Polar amino acids are found in the interior of the protein
c)
Water is always excluded from the active site in the interior of the protein.
d)
Non-polar amino acids are found in the interior of the protein.
5.
Which of the following is correct about biological membranes?
a)
Phospholipid tails are directed toward the aqueous environment
b)
Biological membranes are made up of a lipid monolayer.
c)
Phospholipid head groups are directed toward the aqueous environment.
d)
Molecules freely pass through the membrane.
6.
Which situation described below would result in the MOST rigid biological membrane?
a)
A high ratio of cholesterol
b)
A large number of bulky, glycosylated head groups
c)
A high ratio of unsaturated fatty acid tails in the phospholipids
d)
A small amount of cholesterol
7.
Which of the following three-letter amino acid sequence match with this single-letter
sequence FYAKGPE?
a)
Phe-Tyr-Asp-Lys-Gln-Phe-Glu
b)
Phe-Tyr-Asn-Lys-Gly-Pro-Glu
c)
Phe-Tyr-Ala-Lys-Gly-Pro-Glu
d)
Phe-Tyr-Ala-Lys-Glu-Phe-Gln
IEent
kind
of
bond
Phosphoanhydrid
o
bonds
I
fi
skIstr
eEthe0x
roar
exy
E
x.EE
S
p
Ix
only
some
saw
not
enough
for
significance
F
Phenyl
TX
XP
pre
A
11
Jok
Lys
G
Fin
rated
E 6
13
3
8.
Transformation is a transfer of DNA
a)
Mediated through viral infection
b)
Mediated through bacterial mating
c)
Mediated through uptake of exogenous DNA from the medium
d)
All the above
9.
Which of the following nucleotides are used in Sanger method of DNA sequencing?
a)
Deoxyribonucleotides
b)
Ribonucleotides
c)
Dideoxyribonucleotides
d)
Diribonucleotides
10.
Which of the following is the correct order for DNA condensation in eukaryotes?
a)
Nucleosomes, chromatin, loops, condensed coils, chromosome
b)
Chromatin, nucleosomes, loops, condensed coils, chromosome
c)
Nucleosomes, condensed coils, loops, chromatin, chromosome
d)
Chromatin, nucleosomes, condensed coils, loops, chromosome
11.
The figure below shows a nucleosome core particle. Which of the following is INCORRECT?
a)
H1 histone protein is not part of the histone protein core.
b)
The histone protein core consists of eight histone proteins.
c)
DNA wraps around the histone protein core twice.
d)
The interactions between the DNA and the histone protein core are sequence specific.
12.
Which of the following is considered gene-rich chromatin?
a)
Euchromatin
c) Heterochromatin
b)
Centromeres
d) Telomeres
13.
Which of the following is true for polycistronic genes?
a)
The coding sequences are randomly organized
b)
Each coding sequence has its own promoter
c)
The sequence can be an operon, coding for several proteins of a single biochemical
process or pathway.
d)
The promoter is located downstream of the coding sequence.
DNA
for
DNA
only
right
statement
RELAX
ARNAX
even
a
thing
must
start
0
vi
loops
make
oil
w
nucleosomes
II
es
ota
0
rissed
condensed
non
coding
bothtypes
of
heterochromatin
one
promoted
multiple
regions
Poly
multiple
Istream
One
promoter
multiple
coding
regions
operon
proteins
in
a
single
pathway
4
14.
Iodine and Na
+
are transported in the same direction and have an overall –
ǻ
G
. This
occurs in
a)
passive symporter
b)
primary active transporter
c)
secondary active symporter
d)
secondary active antiporter
15.
Sigmoidal curve of hemoglobin saturation is due to
a)
Multiple subunit compositions
b)
Cooperativity
c)
Low affinity to O
2
d)
All of the above
16.
Which of the following is INCORRECT regarding eukaryotic genes?
a)
7KH ±ƍ 875 DQG ²ƍ 875 DUH QRW WUDQVODWHG EXW SOD\ LPSRUWDQW UHJXODWRU\ UROHV
b)
0DWXUH 51$V KDYH D ±ƍ FDS DQG D ²ƍ
poly(A) tail
c)
Exon sequences are removed from the primary transcript prior to translation.
d)
Alternative splicing allows for one gene to produce several different protein products
17.
Which component of a common plasmid cloning vector is necessary for blue-white
screening?
a)
lacZ gen
c) Antibiotic-resistance gen
b)
Multiple cloning sites (MCS)
d) Origin of replication
18.
Which of the following is correct about restriction enzymes?
a)
All restriction enzymes produce the same type of cleaved ends
b)
Type II and Type III restriction enzymes cut outside of their recognition sequences.
c)
Type II restriction enzymes recognize palindrome sequences.
d)
Restriction enzymes degrade foreign DNA by cleaving methylated DNA
19.
The figure below shows the temperature cycling used for a typical PCR reaction. Which
of the following is occurring at step B?
a)
Denaturation of target DNA
b)
Annealing of primers to target DNA
c)
Extension of primers
d)
Denaturation of primers
20.
Which of the following is NOT true for Sanger DNA
sequencing compared to Maxam-Gilbert DNA
sequencing?
a)
Sanger DNA sequencing is a high efficiency
method of DNA sequencing.
b)
Sanger DNA sequencing relies on chemical degradation of DNA.
c)
Sanger sequencing is also called chain termination sequencing.
d)
Sanger DNA sequencing uses ddNTP
Eno
ATP
anti
same
dirxn
heme
units
E
O
0
Intestine
sina.EE
stick
Titan
Imethated
Item
Temp
Iem
relies
on
this
5
21.
Which of the following is correct concerning a peptide backbone?
a)
The peptide bond allows for free rotation due to its single bond character
b)
A Ramachandran plot shows the allowable
ࢥ
DQG ȥ DQJOHV IRU D SHSWLGH
c)
The torsional angle between the C
Į
and the R group is called
ࢥ
(phi).
d)
The torsional angle between the amide nitrogen and the C
Į
LV FDOOHG ȥ ³SVL´
22.
A __________ mutation will not lead to a change in the protein product of a gene.
a) Frameshift
b) silent
c) nonsense
d) missense
23.
Disulfide bonds stabilize __________ level of protein structure and above.
a)
Quaternary
b) tertiary
c) primary
d) secondary
24.
In the figure shown below, which of the following is labeled “B”?
a)
$QWLSDUDOOHO ȕ VWUDQG
b)
ȕ WXU
n
c)
Loop
d)
3DUDOOHO ȕ VWUDQGV
25.
In the figure shown below, C is which of the following classes?
a)
3UHGRPLQDQWO\ Į KHOL
ces
b)
Įµ
ȕ
c)
Į ¶ ȕ
d)
3UHGRPLQDQWO\ ȕ VKHHWV
26.
An antigen binds to an antibody at which of the following
locations.
a)
Only at the light chain
b)
Only at the heavy chain
c)
At the constant domain
d)
At the variable domain
27.
For Anfinsen’s studies of RNaseA folding, which of the following is not correct?
a)
ȕ
-mercaptoethanol was used to reduce disulfide bonds.
b)
5HPRYDO RI ȕ
-mercaptoethanol, followed by removal of urea, resulted in active RNaseA.
c)
Removal of
ȕ
-mercaptoethanol and urea at the same time resulted in active RNaseA.
d)
Urea was used to disrupt polar interactions within the protein.
28.
Which of the following protein-folding diseases is a loss-of-function disease?
a)
Huntington’s disease
b) Alzheimer’s disease
b)
Cystic fibrosis
c) Creutzfeldt-Jakob disease
2x
bond
EFI
1
de
n
or
insertion
Eagle
nut
changer
Effans
Hands
loop
A
helices
β
sheet
NB
d
B
domains
are
in
these
I
S
es
in
Inactive
s
ty
again
toxicity
damage
Godin
misfolding
loss
OR
CFTR
function
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BI U E E
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