Microbiology Fundamentals: A Clinical Approach
3rd Edition
ISBN: 9781259709227
Author: Marjorie Kelly Cowan Professor, Heidi Smith
Publisher: McGraw-Hill Education
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Chapter 13, Problem 12Q
In order for gene rearrangement of antigen receptors to be successful, the DNA sequence needs to remain in-frame after the rearrangement occurs. Explain what “inframe” means and why it would be necessary in the generation of diversity in antigen receptors.
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Antibody diversity is generated by multiple mechanisms, each of which contributes to the generation of antibodies with up to 1011 different amino acid sequences in their antigen-binding sites. Several of these mechanisms involve changes in the DNA sequences encoding the antibody heavy and light chain proteins. One mechanism that does not rely on changes to the DNA within the immunoglobulin heavy and light chain gene loci is, instead, dependent on:
The contributions of amino acids from both the heavy chain and the light chain to form the antigen-binding site
The random usage of V, D, and J gene segments to form the heavy chain V region sequence
The random usage of k light chains versus l light chains to pair with the heavy chain
The activity of TdT to add random nucleotides at the junctions between the V, J, and D region sequences
The fact that heavy chain V regions contain an extra gene segment encoded by the D region compared to light chain V regions
Some pathogenic microorganisms encode proteins, such as the Staphylococcus Protein A, that bind to immunoglobulin constant region domains with high affinity. These microbial proteins provide a benefit to the microorganism by:
Preventing antibodies bound to the microbe from binding to Fc receptors on phagocytes
Blocking the binding of anti-microbial antibodies to the pathogen surface
Cleaving the antibody into fragments that separate the antigen-binding region from the effector function
Inducing aggregation of the anti-microbial antibodies by multivalent binding to the pathogen-derived protein
Preventing the antibody from neutralizing the pathogen
In the figure below, which close-up view of these two V domains has the amino acid sequences most important for antigen-binding highlighted correctly in red?
Chapter 13 Solutions
Microbiology Fundamentals: A Clinical Approach
Ch. 13.1 - Prob. 1AYPCh. 13.1 - Compare the terms antigen, immunogen, and epitope.Ch. 13.1 - Prob. 3AYPCh. 13.1 - Prob. 4AYPCh. 13.1 - Describe the major histocompatibility complex in...Ch. 13.1 - Prob. 1NPCh. 13.2 - Prob. 6AYPCh. 13.2 - Prob. 7AYPCh. 13.2 - Prob. 8AYPCh. 13.2 - Prob. 9AYP
Ch. 13.2 - Prob. 1MMCh. 13.2 - Prob. 2MMCh. 13.3 - List characteristics of antigens that optimize...Ch. 13.3 - Prob. 11AYPCh. 13.3 - Prob. 12AYPCh. 13.3 - Prob. 2NPCh. 13.4 - Prob. 13AYPCh. 13.4 - Explain how naive T cells become sensitized to an...Ch. 13.4 - Prob. 15AYPCh. 13.5 - Diagram the steps in B-cell activation, including...Ch. 13.5 - Prob. 17AYPCh. 13.5 - Explain the various end results of antibody...Ch. 13.5 - Prob. 19AYPCh. 13.5 - Draw and label a graphwith time on the horizontal...Ch. 13.6 - Prob. 21AYPCh. 13.6 - Discuss the qualities of an effective vaccine.Ch. 13.6 - Name the two major categories of vaccines and then...Ch. 13.6 - Explain the principle of herd immunity and the...Ch. 13.6 - 3. Which characteristic is associated with passive...Ch. 13 - A single bacterium has _______ epitope(s). a. a...Ch. 13 - Prob. 2QCh. 13 - Provide an explanation to refute the following...Ch. 13 - The primary B-cell receptor is a. IgD. b. IgA. c....Ch. 13 - Name three antigen-presenting cells, and what...Ch. 13 - Major histocompatibility molecules are critical...Ch. 13 - In humans, B cells mature in the ___ and T cells...Ch. 13 - Explain how the memory response is the cornerstone...Ch. 13 - Conduct research on clonal deletion and write a...Ch. 13 - Which of the following cells is capable of...Ch. 13 - Is antibody diversity generated at the DNA or RNA...Ch. 13 - In order for gene rearrangement of antigen...Ch. 13 - Prob. 13QCh. 13 - Prob. 14QCh. 13 - Using the details of T-cell activation, suggest a...Ch. 13 - A vaccine that contains parts of viruses is called...Ch. 13 - Explain how herd immunity works to protect the...Ch. 13 - Prob. 18QCh. 13 - Prob. 19QCh. 13 - Chronic lymphocytic leukemia leads to the...Ch. 13 - Prob. 21QCh. 13 - Prob. 1VC
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Need a deep-dive on the concept behind this application? Look no further. Learn more about this topic, biology and related others by exploring similar questions and additional content below.Similar questions
- Would you predict that TLR-XX is able to recognize other types of Gram-negative bacteria, in addition to the one that was used in this experiment? Explain WHY or WHY NOT?see attached diagram.arrow_forwardWhich of the following does not contribute to generating the diversity of antigen-binding specificities among immunoglobulins? a. somatic hypermutation b. random combination of heavy and light chains c. somatic recombination d. activation-induced cytidine deaminase (AID) e. alternative splicing of heavy-chain RNA transcripts.arrow_forwardOne strategy for vaccine development currently under investigation is the use of pathogen-derived T cell epitopes as a component of the vaccine. For viral pathogens, implementing this strategy involves scanning the predicted amino acid sequences of the viral proteins for likely peptide epitopes that would bind to MHC class I and MHC class II molecules. In addition to the complication of MHC sequence polymorphism in the human population, another complication of this strategy for peptide epitopes that would bind to MHC class II proteins is: The importance of viral proteins containing peptides that are cleaved into 8–10 amino acid long fragments. The ability of viruses to mutate their proteins to avoid MHC anchor residue sequences. The fact that long peptides (>13 amino acids) are rapidly degraded in cells. The fact that MHC class II proteins are intrinsically stable, even in the absence of binding to a peptide. The absence of defined sequence motifs that predict peptide binding to…arrow_forward
- Before the mechanism for generating antibody diversity had been established, a mechanism based on protein folding around an antigen was proposed, primarily by Linus Pauling. In this model, antibodies that had different specificities had the same amino acid sequence but were folded in different ways. Propose a test of this model.arrow_forwardThe diagram in the first figure shows simplified versions of the immunoglobulin heavy chain locus, the T-cell receptor b chain locus, and the locus encoding the RAG-1 and RAG-2 recombinases. For the sake of this question, imagine that these diagrams represent all of the gene segments present in the immunoglobulin heavy chain and T-cell receptor b chain locus. You now analyze five individuals, each of which has a single inactivating mutation in a region of one of these three loci. These mutations are each indicated by a red ‘X’ in the second figure, and are numbered 1–5. For each of these inactivating mutations, indicate the alterations and/or defects that would be seen in the repertoire of antigen receptors found in mature B and T cells in that individual. Also, for each mutation, indicate whether the individual would likely show any immunodeficiency, such as a history of recurrent infections.arrow_forwardIn addition to combinatorial joining, what other two processes play a role in antibody diversity?arrow_forward
- Some Pattern Recognition Receptors (PRRs) recognize nucleic acids, like RNA or DNA. Since our own cells contain human RNA and DNA, the activation of innate immune pathways by these PRRs must rely on additional criteria to discriminate self from nonself. Additional criteria include everything EXCEPT: The subcellular location of the RNA The presence of adenosine residues in viral RNA The methylation state of the DNA Unique structures found on viral RNA The subcellular location of the DNAarrow_forwardThe PAMP recognized by TLR3 is doublestranded RNA (dsRNA). Against which pathogens would TLR3 be an effective immune receptor?arrow_forwardDescribe the significance and need for receptor editing as a part of elimination of self-reactive B lymphocytes.arrow_forward
- Some species, like camels, alpacas, and llamas, have evolved variant forms of immunoglobulin proteins that retain the ability to bind to antigens. While overall the antibodies made by these animals are simpler than human or mouse antibodies, an important feature conserved among all of these antibodies is: The presence of both heavy and light chain polypeptides Antigen-binding sites comprised of VH and VL sequences The presence of exactly three constant region domains The presence of two antigen-binding sites per antibody The presence of multiple disulfide bonds linking antibody light chains to heavy chainsarrow_forwardB cells are specialized blood cells that secrete antibodies. Normally, human blood has millions of differenttypes of B cells making millions of different kinds ofantibody molecules. This variety occurs because, as described in the Fast Forward Box in Chapter 13 entitledProgrammed DNA Rearrangements and the ImmuneSystem, antibody genes undergo rearrangements in theprecursors of B cells. Individual B cell precursorsrearrange their antibody genes in different ways.In the blood of patients with cancers called B celllymphomas, almost all of the antibody molecules areall of one type, but this single type of antibody isdifferent in different lymphoma patients.a. Based on this information, provide a brief description of the genesis of B cell lymphomas, focusingon the cells that are overproliferating.arrow_forwardT cells and B cells have many similarities in how they produce their highly diverse repertoire of antigen receptors, but one important difference between them is that B cell receptors can undergo somatic hypermutation to alter their affinity for antigen. This is known as ‘affinity maturation’, and the result is that the pool of B cells specific for a particular microbe will increase their binding affinity. T cells do not engage in either somatic hypermutation or affinity maturation. Why not? What potential harm could come from allowing T cells to alter the affinity of their TCRs after they have already left the thymus and have become activated in a lymph node or spleen?arrow_forward
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