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Apr 3, 2024
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Name: Date: Teacher:
Brooke Kiff
DNA Profiling
Directions:
In this lab, you will learn how DNA is extracted and processed in a lab in an attempt to match it to an individual and solve a crime.
Procedure:
Part 1:
1.
Go to: Learn. Genetics DNA Virtual Extraction Lab
(http://learn.genetics.utah.edu/content/labs/extraction/
2.
Click “Start Lab” and follow the on
screen directions.
‐
3.
List the 3 reasons that scientists isolate DNA for DNA Analysis under “Reasons for DNA Extraction” in the
Data section A below.
4.
List the 4 basic steps of DNA Extraction as stated in the introduction of the virtual lab under “4 Basic Steps of DNA Extraction as listed in the Introduction:” in Data section B below
5.
Follow the procedures (in the correct order) to complete the DNA extraction procedure. Move the icons to the appropriate places to complete the virtual lab.
6.
After each step, write a description of what you did and why in Data Table 1. Be careful to do the steps in the correct order, if you make a mistake, you will have to start over again.
7.
Complete the Results and Analysis & Conclusion sections before closing the virtual lab website.
Part 2:
1.
Go to: Create a DNA Fingerprint lab
(https://mvu.coursearc.com/index.php?cID=58170&checkedIn=true) 2.
Read the introduction about the crime and summarize the case facts in the “Crime Scene Summary” found in Data section C below.
3.
Follow the procedures (in the correct order) to complete the DNA fingerprinting procedure. Move the icons to the appropriate places.
4.
After each step, write a description of what you did and why in Data Table 2. Be careful to do the steps in the correct order, if you make a mistake, you will have to start over again.
5.
Complete the Results and Analysis & Conclusion sections before closing the virtual lab website.
Data: (3 points)
A.
Reasons for DNA Extraction Genetic testing, body identification, or analysis of forensic evidence. B.
4 Basic Steps of DNA Extraction as listed in the Introduction: Collect cheek cells, burst cells open to release DNA, separate DNA from proteins and debris, and isolate concentrated DNA,
1
© 1996-present VHS, Inc. All rights reserved.
C.
Crime Scene Summary (
Include a short description of crime, crime scene location, date/time, potential suspects and all-important pieces of evidence.) Friday, November 20, at Oakwood Middle School, the victim, Madison brought a grape soda to school. At lunch, she tookout her soda and then went to go get a brownie. When she came back, her soda can was empty, and none of her classmates admitted to the crime. Madison wants to create a DNA fingerprint of the culperit and match it to saliva samples of the classmates that were sitting at her lunch table. Prime suspects include: David, Jill, Tara, Adam, Krista, Midori, and Michael. Table 1: DNA Extraction Steps (15 points)
Description of task in this step
(This is what you did in the virtual lab.
An example: I used a swab to collect a
sample of cheek cells from the subject’s
mouth.)
Explain why this step is done or what is
accomplished in this step.
(Explain why Forensic Scientists perform this
step in the analysis; in other words, what
does it “do”? An example: This step causes
1. I colleted cheek cells from the subjects mouth by using a buccal swab
Inside each cheek cell is a nucleus, and inside the nucleus is DNA
2. I placed the swap in an Eppendorf tube and cut off the end of the swab. The swab is placed in the Eppendorf tube to keep it from becoming contaminated and the ends are cut off to close the tube. 3. Using the micropipettor, I added some lysis solution to the tube.
Lysis solution contains detergent and proteinase K. Detergent will burst open the cells and release the DNA, and the proteinase K cuts apart the histones to free the DNA
4.The tube is then placed in the warm underwater bath
The warm water will help free the DNA from the cells
5.Remove the swab from the warm water and add some concentrated salt solution.
This will cause the proteins and other cell debris to clump together.
6. Place the tube into the centrifuge. A tube containing water is placed next to the tube in order to balance the centrifuge.
In the centrifuge, tubes are spun around at high speeds and heavy clumps or protein and debris sink
to the bottom, while the strands of DNA remain distrubuted through the liquid. 7. Use the micropipettor to remove the top liquid, containing DNA, and place it into a clean tube. The proteins and other debris stay behind.
This will separate teh DNA from the debris and proteins. 2
© 1996-present VHS, Inc. All rights reserved.
8. Add some isopropyl alcohol to the tube and invert the tube several times. This mixes the isopropyl alcohol into the DNA solution. Because DNA is not soluble in isopropyl alcohol, it comes out of solution and you can see the DNA with the naked eye. 9. Place the tube in the centrifuge next to a tube
of water again. The DNA sinks to the bottom of the tube and you can isolate the concentrated DNA. Keep the DNA is dried, you can store it in the freezer for many years.
3
© 1996-present VHS, Inc. All rights reserved.
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Related Questions
Directions: The following story is about a crime solved through biotechnological techniques. The techniques used are DNA fingerprinting and polymerase chain reaction (PCR). DNA fingerprinting is a technique in which an individual’s DNA is analyzed to reveal the pattern of particular short nucleotide sequences. This pattern is claimed to be unique to the individual concerned and can thus be used for identification purposes. Polymerase chain reaction, on the other hand, is a technique used to replicate a DNA fragment so as to produce many copies of a particular DNA sequence. Why do you think there’s a need to generate several copies of the DNA? You will learn the answers to this as you go through the story. Read the story carefully and answer the questions that follow.
Questions:
1. How did the investigators conclude that the suspect was indeed the murderer?
2. What if a strand of hair was found in the truck bed instead of a seed pod, do you think it will still lead to the…
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Question: How can DNA evidence be used to convict or exonerate a defendant? Why is DNA evidence so powerful?
Answer:
DNA evidence can be used to perform DNA profiling to determine the genotype of the specific DNA sample. With just a small amount of DNA, PCR can produce billions of copies of that specific segment. The segments that are used are from non-coding regions that contain STR’s or short tandem repeats. These very short DNA sequences are repeated and are specific to individuals because we inherit them from our mother and father. Gel electrophoresis separates the PCR products based on their size and each band is compared to the allele ladder. This process helps to identify the alleles present in the original samples. DNA profiling is performed at many loci to be able to tell the genetic difference between different individuals with a lot of certainty. The DNA from the different suspects is compared to the allele…
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DNA EXTRACTION
Materials:
knife 1 cup of fruit
Table salt clean piece of cloth or strainer for filtering
resealable bag dishwashing liquid
70% rubbing alcohol (chilled) shot glass (or any transparent and narrow container resembling a test tube)
How to do the extraction:
Before you begin, make sure you have chilled your alcohol in the freezer for at least 3 hours. Room temperature alcohol will not work nearly as well as cold alcohol. Place about 50 mL of alcohol in the freezer to chill it and take it out only when you’re going to need it. (The alcohol will not actually freeze.)
1. The first thing you will need is a sample. Since DNA is found in all living…
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Please provide answers of both parts ..
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Please draw or send me a picture of the structure of DNA and label the parts.
Thank you very much.
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Can you please check my answer and make sure it is correct.
Question: Describe the two roles primers play in PCR.
Answer:
Primers are short sequences of single stranded DNA that mark both the ends of the target sequence to be amplified during PCR. One primer attaches to the top strand at one end (forward primer) and the other one attaches to the bottom strand at the other end of the segment (reverse primer). They are made specifically to attach to these sections of DNA because the nucleotides of the primers are complementary to the target sequence. Other than marking the starting and end points for PCR, primers are also necessary for the process because without them, DNA polymerase wouldn’t be able to synthesize the complementary strand of DNA because it can only add nucleotides to an existing piece.
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Copy and paste the link below and watch the video on Youtube and Answer the Questionshttps://www.youtube.com/watch?v=g-dNJdOvBM4
Polymerase Chain Reaction
Questions:
1. What are the materials used for the polymerase chain reaction?
2. Draw a schematic diagram of the procedure in PCR.
3. Why is it important to design the primers at the start of the laboratory procedure?
4. What are the components of the PCR buffer and what is its pH range? What is the purpose of the buffer?
5. What is the use for magnesium chloride?
6. How much template DNA is added? What is the concentration of the primers?
7. At what temperatures does denaturation, annealing and extension occur? Why are the processes placed in that temperature?
8. In this particular PCR experiment, how many cycles was used?
9. Can this PCR be used on its own to find out if a person has Covid or not on its own? Why or why not?
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Question: In addition to master mix, what else must be added to each PCR tube? Why?
Answer:
In addition to master mix, the primers must be added to the PCR tubes. Each tube is also reserved for one individual’s specific section of DNA. So not only do primers needed to be added that are made specifically for the person’s DNA, but the DNA itself from the suspect needs to be added to the PCR tubes (DNA template strand). We also must have a control which contains sterile water, and one PCR tube reserved for DNA from the crime scene.
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I need help defining what is DNA Chromatography.
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Indicate true or false for the following statements
The glycerol used in the DNA loading dye allows DNA to be visualized under UV light.
The DNA Ladder used for agarose gel electrophores can be used to estimate fragment size and DNA concentration.
During gel electrophoresis a DNA smear may indicate that DNase was still present in the sample.
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DNA Sample : Blood Stain collected from handle
of knife
blood
Bob
Sue
John
Lisa
stain
1. What do you notice about the black lines?
2. How do we read the gel electrophoresis?
3. Which sample are we comparing Bob, Sue,
John, and Lisa's DNA to?
4. How do they compare?
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6. Refer to the figure answer the following questions.
Alignment
Hide Colors
View Alignment File
CLUSTAL W (1.83) multiple sequence alignment
Human_AA
Oyster AA
Corn_AA
-MKLFWLLFTIGFCWAQYSSN--TOOGRTSIVHLFEWR--------VDIALECERYLAPK 50
-QVILWCLLYVGVVRGGTWSNPTCAPGRHTITHLFEWK-
MAKHLAAMCRCSLLVLVLLCLGSQLAQSQVLFQGFNWESWKKOGGWYNYLLGRVDDIAAT 60
--WSDIAAECERFLGPM 52
:..
GFGGVQVSPPNENVAIHNPFRPWWERYQPVSYKLCTRSGNEDEFRNMVTRCNNVGVRIYV 110
Human_AA
Oyster AA
Corn_AA
GYCGVQISPPNENRIVTSPNRPWWERYQPVSYKLVTRSGNEADLRDMVQRCNKVNVRIYA 112
GATHVWLPPPSHSVAPQGYMPGRLYDLD-----ASKYGTHAELKSLTAAFHAKGVKCVA 114
:: *.. :::.:. : .*:
*...
DAVINHMCGNAVSAGTSSTCGSYFNPGSRDFPAVPYSGWDFNDG-KCKTGSGDIENYNDA 169
DVVINHMTG-AGGSGTG-TGGSHWDGGSLSYPGVPFSSWDFNSGSECSTGDGNIHNYNDP 170
DVVINHRCA---DYKDGRGIYCVFEGG- -TPDSRLDWGPDMICSDDTOYSN--GRG 163
Human_AA
Corn_AA
:: *
Figure: Sequence alignment
a) How many different species are used as the source of sequence
in this analysis?
I. two
II. one
III. three
IV. four
b) What does the (*) mark mean in…
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The following gel shows the results of a crime scene investigation. Lane 1 shows a DNA sample
that was obtained from the scene of a crime (there was evidence of the criminal cutting himself, so
it's the criminal's blood sample that produced the DNA bands in lane 1).
Lanes 2-7 shows a DNA sample from six potential suspects held in connection with the crime.
Arrange the bands labeled A, B, C, D from largest to smallest.
1 2 3 4 5 6 7
OC, A, D, B
A, B, C, D
OB, D, A, C
O D, A, C, B
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could I have help with this question?
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Complete the table. Answer the red colors.
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Please draw the structure of DNA and label the parts.
Thank you very much for your help.
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A health provider contacts you regarding a specific patient. They ask you to sequence this patient’s DNA and sends you her blood sample. You split the patient’s blood sample into three equal parts. With each part, you perform three different protocols of DNA extraction and purification. You analyze the resulting DNA using the nanodrop.
Protocol
A260/280
ng/ul DNA
Total volume (ul)
1
2.02
50
60
2
1.45
156
200
3
0.30
300
120
d)Halfway through the electrophoresis of your gel you realized that rather than using a buffer to make up your gel, you actually used distilled water. Do you think this mistake would alter the outcome of your gel electrophoresis? Explain.
e) If you added your DNA to a well in a gel without first mixing it with gel loading solution, would this impact the final results? Explain.
f) Only after the run you realize that you forgot to add ethidium bromide to the gel. What will happen to your sample? What could you do to the gel after the run?
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RECOMBINANT DNA
BRIEFLY, DESCRIBE RECOMBINANT DNA AND GIVE ONE CONCRETE EXAMPLE. EVALUATE THE SIGNIFICANCE/PRACTICAL APPLICATIONS OF THIS DNA TECHNOLOGY BY CONSIDERING ETHICAL AND MORAL IMPLICATIONS BEHIND IT.
RECOMBINANT DNA
EXAMPLE:
MODIFIED TRAIT
GENE MODIFICATION
RECIPIENT ORGANISM
FIELDS OF APPLICATION
ALSO, WHAT ARE YOUR INSIGHTS? IN 2 TO 3 SENTENCES.
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Group of answer choices
ddNTPs
an oligonucleotide primer
DNA polymerase
dNTPs
DNA ligase
a restriction enzyme
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Once you have cut your circular DNA it becomes linear and you need to insert/glue the functional
gene sequence with the cut piece of DNA. What will you use to glue the pieces of DNA together?
Edit View Insert Format Tools Table
12pt v
Paragraph v B I UA
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The following statements are either accurate as written or contain some errors. You need to rewrite each as an accurate statement. Make sure that you do not change the material the sentence is about. Highlight or underline any changes that you make to statements. Thank you!
1. Primers cleave DNA at recognition sequences. They can produce either matching ends, which are fragments with overhangs, or it can produce blunt ends, which are fragments without overhanging ends.
2. Codons are three nonoverlapping (such that each ribonucleotide is only in one codon) ribonucleotides that specify a particular amino acid. They are "read" in a linear fashion by the ribosome to be translated into a polypeptide.
3. The diagram below is an illustration of an important molecule for transcription. It depicts a ribosome that has two important regions. Region A that attaches to an amino acid and Region B that contains a codon.
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Your next task is to study Ebola virus (EboV) sequences of different strains. You have received sequences of different Ebola virus strains collected during the Ebola outbreak of 2013 – 2016.
EboV from Guinea pig
Reference DNA Sample
CTA
TGC
AAG
CAG
TTA
mRNA
Protein
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Answer each of the following correctly. Designer Genes Work (This is all about Applications of Recombinant DNA).
1. What is Genetically Modified Organism (GMO)?(1-4 sentences only)
2. Illustrate your own Designer genes using this information:The Arctic apple is a fruit engineered to resist browning after being cut. Currently they are only available in the US – in golden, fuji and gala varieties – where they have been given Food and Drug Administration approval. If approved in Europe, they would have to be labelled as genetically modified. The manufacturers claim the main benefit is to help cut down on food waste. And based on the following:
a. Identify a special trait.
b. Identify a source organism.
c. Identify a target organism
d. Identify the modified/added trait.
Example:
Hot Tomato > Chili > Tomato > Spicy Tomato
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Question: List the ingredients of master mix, and state the purpose of each ingredient.
Answer:
Taq DNA polymerase
This enzyme synthesizes the complementary strand of the DNA template after attaching to the primer. This means that it adds on free nucleotides to the existing strand, but helps speed up the covalent bonding between these newly added nucleotides. This enzyme is also thermally stable meaning that it can withstand the hot temperatures needed for PCR to occur. This hot temperature is needed for the denaturation step when the double stranded DNA has to be unwound and separated into two strands.
Individual building blocks of DNA (either free nucleotides A, T, C, and G or dNTP’s)
These nucleotides are needed to build the complementary strand of DNA
A special buffer to maintain the optimal pH, salts, and MgCl2
These buffers help maintain a good pH that doesn’t become too acidic or basic for Taq DNA polymerase to…
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Answer each of the following correctly. Designer Genes Work (This is all about Applications of Recombinant DNA).
1. How does DNA Replicate?(1-3 sentences only)
2. What is Genetically Modified Organism (GMO)?(1-4 sentences only)
3. Illustrate your own Designer genes using this information:The Arctic apple is a fruit engineered to resist browning after being cut. Currently they are only available in the US – in golden, fuji and gala varieties – where they have been given Food and Drug Administration approval. If approved in Europe, they would have to be labelled as genetically modified. The manufacturers claim the main benefit is to help cut down on food waste. And based on the following:
1. Identify a special trait.
2. Identify a source organism.
3. Identify a target organism
4. Identify the modified/added trait.
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Hot Tomato > Chili > Tomato > Spicy Tomato
It was reported this week that Brazilian scientists are hoping to create spicy tomatoes using Crispr…
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- Directions: The following story is about a crime solved through biotechnological techniques. The techniques used are DNA fingerprinting and polymerase chain reaction (PCR). DNA fingerprinting is a technique in which an individual’s DNA is analyzed to reveal the pattern of particular short nucleotide sequences. This pattern is claimed to be unique to the individual concerned and can thus be used for identification purposes. Polymerase chain reaction, on the other hand, is a technique used to replicate a DNA fragment so as to produce many copies of a particular DNA sequence. Why do you think there’s a need to generate several copies of the DNA? You will learn the answers to this as you go through the story. Read the story carefully and answer the questions that follow. Questions: 1. How did the investigators conclude that the suspect was indeed the murderer? 2. What if a strand of hair was found in the truck bed instead of a seed pod, do you think it will still lead to the…arrow_forwardPlease convert to past tense and passive voice by using point formarrow_forwardCan you please check my answer and make sure it is correct. Question: How can DNA evidence be used to convict or exonerate a defendant? Why is DNA evidence so powerful? Answer: DNA evidence can be used to perform DNA profiling to determine the genotype of the specific DNA sample. With just a small amount of DNA, PCR can produce billions of copies of that specific segment. The segments that are used are from non-coding regions that contain STR’s or short tandem repeats. These very short DNA sequences are repeated and are specific to individuals because we inherit them from our mother and father. Gel electrophoresis separates the PCR products based on their size and each band is compared to the allele ladder. This process helps to identify the alleles present in the original samples. DNA profiling is performed at many loci to be able to tell the genetic difference between different individuals with a lot of certainty. The DNA from the different suspects is compared to the allele…arrow_forward
- Please support your answer with any source, such as a book or scientific researcharrow_forwardWrite a brief paragraph about what a scientist could do with DNA. Could you please help me with this? I am struggling tremendously. Thanks!arrow_forward(THIS IS NOT GRADED.) This is NON-MANDATORY homework for a practice assessment. I need some assistance with these questions, so I can use them for studying material. Thank you so much! I highly appreciate it! (I am using this for study material.)arrow_forward
- DNA EXTRACTION Materials: knife 1 cup of fruit Table salt clean piece of cloth or strainer for filtering resealable bag dishwashing liquid 70% rubbing alcohol (chilled) shot glass (or any transparent and narrow container resembling a test tube) How to do the extraction: Before you begin, make sure you have chilled your alcohol in the freezer for at least 3 hours. Room temperature alcohol will not work nearly as well as cold alcohol. Place about 50 mL of alcohol in the freezer to chill it and take it out only when you’re going to need it. (The alcohol will not actually freeze.) 1. The first thing you will need is a sample. Since DNA is found in all living…arrow_forwardPlease provide answers of both parts ..arrow_forwardPlease draw or send me a picture of the structure of DNA and label the parts. Thank you very much.arrow_forward
- Can you please check my answer and make sure it is correct. Question: Describe the two roles primers play in PCR. Answer: Primers are short sequences of single stranded DNA that mark both the ends of the target sequence to be amplified during PCR. One primer attaches to the top strand at one end (forward primer) and the other one attaches to the bottom strand at the other end of the segment (reverse primer). They are made specifically to attach to these sections of DNA because the nucleotides of the primers are complementary to the target sequence. Other than marking the starting and end points for PCR, primers are also necessary for the process because without them, DNA polymerase wouldn’t be able to synthesize the complementary strand of DNA because it can only add nucleotides to an existing piece.arrow_forwardHow is the DNA used for catching crime suspects. Describe the procedure and cite particular example where it helped solve a case or absolved an innocent person from any wrongdoingarrow_forwardCopy and paste the link below and watch the video on Youtube and Answer the Questionshttps://www.youtube.com/watch?v=g-dNJdOvBM4 Polymerase Chain Reaction Questions: 1. What are the materials used for the polymerase chain reaction? 2. Draw a schematic diagram of the procedure in PCR. 3. Why is it important to design the primers at the start of the laboratory procedure? 4. What are the components of the PCR buffer and what is its pH range? What is the purpose of the buffer? 5. What is the use for magnesium chloride? 6. How much template DNA is added? What is the concentration of the primers? 7. At what temperatures does denaturation, annealing and extension occur? Why are the processes placed in that temperature? 8. In this particular PCR experiment, how many cycles was used? 9. Can this PCR be used on its own to find out if a person has Covid or not on its own? Why or why not?arrow_forward
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