Choi, James_Report_Digestion Analysis
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University of Illinois, Urbana Champaign *
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Course
251
Subject
Biology
Date
Apr 3, 2024
Type
Pages
5
Uploaded by MateRainGoldfish24
James Choi
MCB 251
Digestion Analysis
Procedure
:
1.
Obtain a gel electrophoresis chamber, a casting tray, and an agarose gel (with the wells
facing the negative end). Fill the chamber with a buffer so that it is above the gel and
covering the wells.
2.
Obtain the DNA restriction enzyme made last week.
3.
Add 10 uL of 5x blue to each microfuge tube, and pipette gently to thoroughly mix.
4.
Using a P20 micropipette, insert them into the gel using the following measurements.
a.
Lane #1 (10 uL): DNA ladder
b.
Lane #2 (15 uL): EcoRV (E)
c.
Lane #3 (15 uL): PstI (P)
d.
Lane #4 (15 uL): EcoRI + PstI (EP)
e.
Lane #5 (15 uL): Undigested (C)
f.
Lane #6 (15uL): BamHI (B)
g.
Lane #7 (2 uL): DNA ladder
5.
Set the P20 to 10uL and carefully add the ladder, then after changing tips set the P20 to
15uL and add each DNA sample. Be careful not to puncture the gel.
6.
Remain other wells empty.
7.
Place the lid onto the gel electrophoresis chamber, and plug in the electrodes to the
power box. Before applying the current, wait for all the lab groups.
8.
Run the gel at 100V for 90 minutes, or until the bands are halfway across the gel. Check
for bubbles in the buffer.
9.
Once the process is complete, cut the power, remove the electrodes, and obtain a
casting tray with gel.
10. Bring it to the UV transilluminator.
11. Gently slide it off the tray into the box and make sure the lamps are off.
12. Close the machine and capture an image of the gel, which should be fluoresced due to
the UV lamps lighting the ethidium bromide.
Data/Results:
The result of our gel electrophoresis was unclear due to the
lack of band size. This might be caused by the low quantity
of the sample. Therefore, we are going to use demo gel for
pBR322 digestion.
Demo gel for the pBR322
For Demo gel, each lane contains:
-
Lane #1: Ladder
-
Lane #2: BamHI
-
Lane #3: EcoRI
-
Lane #6: EcoRI + PstI
-
Lane #7: PstI
Lane 1: Ladder (Standard)
Lane 2: BamHI
Distant traveled (mm)
Base Pairs (kb)
28.5
4.3
Lane 3: EcoRI
Distant traveled (mm)
Base Pairs (kb)
28
4.5
Distant traveled (mm)
Base Pairs (kb)
20
10.0
22
8.0
24.5
6.0
26.5
5.0
29
4.0
34
3.0
40.5
2.0
46
1.5
55
1.0
68
0.5
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Related Questions
can you please help me with this? Thank you.
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Assignment_12.pdf - Adobe Reader
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3. Recombinant protein is produced by a genetically engineered strain of Escherichia coli during cell
growth. The recombinant protein can be considered a product of cell culture even though it is not
secreted from the cells; it is synthesized in addition to normal E. coli biomass. Ammonia is used as
the nitrogen source for aerobic respiration of glucose.
The recombinant protein has an overall formula of CH1.5500.31N..25. The yield of biomass (excluding
recombinant protein) from glucose is measured as o.48 g/g; the yield of recombinant protein from
glucose is about 20% of that for cells.
How much ammonia is required?
What is the oxygen demand?
If the biomass yield remains at 0.48 g /g, how much different are the ammonia and oxygen
requirements for wild-type E. coli that is unable to synthesize recombinant protein?
а.
b.
с.
24°C
08:39
Berawan
27/04/2022
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You are a group of microbiologists tasked to test the presence of coliforms in the newly built water station. You are
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bacteria. Include pictures and references.
Bacteria
Enrichment
(Broth/Agar)
Presumptive test
(Broth/Agar)
Isolation Media
(Broth/Agar)
E. coli
Salmonella
Shigella
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2. What is the difference between nutrient broth and nutrient agar?
3. What is the importance of these steps (Enrichment, Isolation, and presumptive test) in isolating bacteria?
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3.how can you tell if agel is running
4.outline the process use in the preparation of agarose gel of 1.5 concentration
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6.name twoexamples of the dye used in gel electrophoresis
7.how do we prepare x1(concentration) TAE BUFFER form 50x TAE buffer
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lactose. After a day of monitoring the cells, you note that the culture entered into lag phase growth initially and is now currently growing
exponentially. In addition, you find that the cultures doubling time is 30 minutes. You know that the doubling time of E. coli in glucose
media is 20 minutes. You did not change the oxygen content or temperature at which you were growing the cells, E. coli is still aerobically
respiring at 37°C.
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O Live cells only via membrane filtration or serial dilution
O All cells via membrane filtration or serial…
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monitor the growth of these cells in the lactose broth using a viable plate count technique and plot the Growth Curve for E. coli growing on
lactose. After a day of monitoring the cells, you note that the culture entered into lag phase growth initially and is now currently growing
exponentially. In addition, you find that the cultures doubling time is 30 minutes. You know that the doubling time of E. coli in glucose
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Case Study: You are asked to inoculate lactose media (broth) with E. coli that was growing exponentially in glucose media (broth). You
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exponentially. In addition, you find that the cultures doubling time is 30 minutes. You know that the doubling time of E. coli in glucose
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Question: If the lac operon is 'on' what does this imply about the cell?
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O Lactose is being catabolized and glucose is no…
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Calculate the total number of cells in tube number 2.
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