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Arabidopsis Thaliana Essay

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Project Proposal:
AIMS
- Bioinformatic approach to aid gene identification and characterisation in Arabidopsis thaliana
- Evaluate and integrate the accuracy of Arabidopsis database

INTRODUCTION:
Arabidopsis thaliana is a model plant for research and has been used wisely to study many aspects of plant biology. There is significant amount of information about this plant in the database, such as fully sequenced and annotated genomic sequence, extensive expressional data and functional characterisation data. This project aims at using such information to aid gene identification.
The project will focus on a specific region (between AGIs 18,500,000 & 19,800,000) on Chromosome V, where a gene involved in root development has …show more content…

1999).
Arabidopsis thaliana is the first plant for which the complete genome has been sequenced. The 120 megabase genome of Arabidopsis is formed into five chromosomes and consists of an approximate 20,000 genes(Sato, Kotani et al. 1997) . In this project we will focus on a specific region on chromosome V, where a gene involved in root development has been mapped.Chromosome V is 26 mega bases long and it also the second largest regions of genome(Tabata, Kaneko et al. 2000). The entire genome of chromosome 5, excluding the centromeric and telomeric regions, was covered up by two large contigs 11.6 Mb and 14.2 Mb long separated by the centromeric region(Kotani, Sato et al. 1997).The 5,874 genes encoded on chromosome 5 reveal several new functions in plant, and the patterns of gene organization provides insights into the mechanism and extent of genome evolution in plants(Tabata, Kaneko et al. 2000).
Arabidopsis thaliana is a member of the mustard family Cruciferae or Brassicaceae with a natural distribution all around Europe, Asia, and North. Many different ecotypes have been collected from natural populations and are available for experimental analysis. The Columbia and Landsberg ecotypes are the accepted standards for genetic and molecular studies. The whole life cycle, including seed germination, formation of a rosette plant, bolting of the main stem, flowering, and maturation of the first seeds, is completed over 6 weeks. When it comes to size, almost

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