Horizontal sequence :VIRL Vertical sequence:MKF Scoring rules: g/o = -3, g/e = -1, match or mismatch - from PAM250 substitution matrix below. SW algorithm. 1. Complete the scoring matrix. Scoring matrix with PAM250 scores: V I R L M K F 2. Set up, initialize and complete the SW matrix. 3. Retrace, align and score alignment(s). Use the arrows and circles for the matrix and path(s). V I R L M K F Align and score all optimal alignments here.
Horizontal sequence :VIRL
Vertical sequence:MKF
Scoring rules: g/o = -3, g/e = -1, match or mismatch - from PAM250 substitution matrix below.
- SW algorithm.
1. Complete the scoring matrix.
Scoring matrix with PAM250 scores:
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V |
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R |
L |
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M |
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K |
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F |
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2. Set up, initialize and complete the SW matrix.
3. Retrace, align and score alignment(s).
Use the arrows and circles for the matrix and path(s).
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V |
I |
R |
L |
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M |
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K |
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F |
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Align and score all optimal alignments here.
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