Prescott's Microbiology
Prescott's Microbiology
10th Edition
ISBN: 9781259281594
Author: Joanne Willey, Linda Sherwood Adjunt Professor Lecturer, Christopher J. Woolverton Professor
Publisher: McGraw-Hill Education
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Chapter 18.3, Problem 3RIA

Retrieve, Infer, Apply

Examine figure 18.8. How might metagenomics be used to isolate genes encoding a potentially new antibiotic?

Chapter 18.3, Problem 3RIA, Retrieve, Infer, Apply Examine figure 18.8. How might metagenomics be used to isolate genes encoding

Figure 18.8 Metagenomic analysis. DNA has been extracted directly from environments such as (a) bacterial mats at Yellowstone National Park, (b) the human colon, (c) cabbage white butterfly larvae, and (d) tube worms from hydrothermal vents. The DNA can be used to construct a metagenomic library and analyzed by Sanger sequencing (top); however, NGS is more likely to be used (bottom), thereby avoiding the need for genomic library construction.

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Paraphrase and add more information "This study will concentrate solely on the molecular characterization of seaweed samples collected on Panglao island inSouth-Central Luzon, Philippines. Molecular data will be limited to DNA sequences, with identification relying heavily on Genbank returns via blastN. The researchers would obtain their samples from the generated database and analyze the DNA barcode of each macroalgae. The researchers would also compare the previous list of discovered seaweeds from Panglao island to generate a new and updated version for this study. The research would no text end outside or to the neighboring islands around Panglao,  Bohol. Neither would the researchers add or include specimens that did not appear in the database or originate from Panglao island. The data to be considered would also not discuss or include the entire taxonomic key of each available sample."
Experiment A microarray was hybridized with a mixture of two differentially labeled fluorescent cDNAs, one prepared using retinal RNA of 1-day-old mice (labeled with a green fluorescent dye) and the other prepared using retinal RNA of 28-day-old mice (red fluorescence). The two probes were prepared from identical amounts of retinal tissues and were mixed together for hybridization to the microarray. Unhybridized probes were washed away, and the microarray was photographed in a fluorescence microscope.

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Prescott's Microbiology

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