DNA Technology - gel electrophoresis lab Biol 100L worksheet-1
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Biology
Date
May 4, 2024
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DNA Technology: GEL ELECTROPHORESIS Lab for Bio 100 Lab Name: Date: You are going to walk through a Simulation that introduces the steps and techniques of sorted DNA fragments called Gel Electrophoresis. Begin by opening a free lab site hosted by Harvard, if this is your first time at this site you will need to sign up (it’s free) and open M07 Lab DNA Technology – 2. Gel Electrophoresis at this link: https://www.labxchange.org/library/items/lb:LabXchange:9548bee3:lx_simulation:1 Choose Level 1 and Start simulation: Context: 1.
Gel Electrophoresis is used to separate biomolecules, like DNA, according to what two properties? Size and electrical charge 2.
In general, an electric current will be applied to the gel and the charged molecules with move in which direction? Towards the oppositely charged electrode 3.
Since DNA fragments all have a similar negative charge they will move in which direction specifically? Towards the positive electrode 4.
Which will move farther through the gel pores, smaller or larger fragments? Smaller Materials: 1.
What does reagents mean? Which will be used in this simulation? Chemicals that can be used in the experiment. S1, S2, S3 solution & 1x sodium borate buffer
2.
What is micropipetting equipment used for? They are used to measure small volumes. 3.
What is the overall purpose of electrophoresis equipment? They sort molecules by size and charge. 4.
What two pieces of other equipment will be used? Microcentrifuge & trash Predictions: Follow the directions and pull each gel to the position you think it well be at the end of the simulation and take a partial screen shot and place here:
Protocol (order) that will be used in this simulation: 1.
__Prepare__ the electrophoresis box. 2.
__Centrifuge___ the solution tubes. 3.
Draw up solution __1__. 4.
___Pipette______ solution 1 into well 1. 5.
Pipette other solutions into the remaining __wells__. 6.
___Conduct___ gel electrophoresis. Work your way through the protocol pages 1 through 6. 1.
Place a partial screen shot here of the micropipette volume screen once set for use (be careful, the red number is a tenth position so you want 10.0): 2.
Record which well you pipetted each sample into? Sample 1 : Well 1 Sample 2: Well 2 Sample 3: Well 3 3.
Take a partial screen shot of the adjusted power supply controls, with Voltage at 130 V and time at 10 minutes (You do not want to adjust the current or power):
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With this non-graded worksheet, you will put in practice the knowledge you acquired on DNA structures and
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O Figure labeling
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OMP O
HO-P-O-
H₂N
N
2
N
N
3
1
6
Ο
5
OH
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7
3' carbon
5' carbon
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Read 13-2 Manipulating DNA pages 322-323.
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You can draw a graphic organizer, make a table, or write a few sentences describing your
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2) Devise flowchart that shows the steps to prepare DNA for gel electrophoresis, as well
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O Focs
ere to search
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CO
RU
G\
L
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With this non-graded worksheet, you will put in practice the knowledge you acquired on DNA structures and
synthesis. We will go over the answers together in class and you will have plenty of opportunities to ask for
clarifications The worksheet should take 60 to 90 minutes to complete and is based around:
O Figure labeling
O Fill in the blank questions
O Multiple-choice questions
H₂N
N
2
N
OMPIO
HO-P-O-
1
6
Ο
5
OH
N
4
3
7
3' carbon
5' carbon
Nucleoside
Glycosidic bond
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NH₂
NH₂
H.
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N
H
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2
3
N
H
H
Ο
H
Purine
Pyrimidine
Nucleobase 1 Nucleobase 2
Nucleotide
Nucleobase
Nucleobase 3 Nucleobase 4
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knife 1 cup of fruit
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resealable bag dishwashing liquid
70% rubbing alcohol (chilled) shot glass (or any transparent and narrow container resembling a test tube)
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Q
Lab Report 6 worksheets 314 F22 .DOCX
File Edit View Insert Format Tools Help
A 100%
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Summary
Grades for Arysta Visser: 23 x M Uh-oh! There's a problem w X b The restriction EcoRI cleaves X + Untitled spreadsheet - Goog X
https://docs.google.com/document/d/1mKY1HIgMPRh1kRDCmX7msBF2yf07-ogT/edit
Outline
Headings you add to the document will
appear here.
Normal text
Times ...
12 + B I U
2
18. The restriction EcoRI cleaves double-stranded DNA at the sequence 5'-GAATTC-3', the
restriction enzyme HindIII cleaves at the sequence 5'-AAGCTT-3', and the restriction enzyme
BamHI cleaves at 5'GGATCC-3. An 805 bp circular plasmid is digested with each enzyme
individually and then in combination, and the resulting fragment sizes are determined by
means of electrophoresis. The results are as follows:
1
Restriction Enzyme(s)
EcoRI
BamHI
HindIII
EcoRI and BamHI
EcoRI and HindIII
BamHI and HindIII
3
Practice
====•=•€ EX
Fragment lengths (base pairs)
430 bp, 375 bp
470 bp, 335 bp
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DRAW THE BANDS on the gel where they would appear:
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- Worksheet-DNA 2D, synthesis and 3D With this non-graded worksheet, you will put in practice the knowledge you acquired on DNA structures and synthesis. We will go over the answers together in class and you will have plenty of opportunities to ask for clarifications The worksheet should take 60 to 90 minutes to complete and is based around: O Figure labeling O Fill in the blank questions O Multiple-choice questions OMP O HO-P-O- H₂N N 2 N N 3 1 6 Ο 5 OH 4 7 3' carbon 5' carbon Nucleoside Glycosidic bond Phosphate group NH₂ NH₂ H H₂C N N H- 1 2 3 H H O H N Purine Pyrimidine Nucleotide Nucleobase Nucleobase 1 Nucleobase 2 Nucleobase 3 Nucleobase 4 NH 4 NH₂arrow_forwardInstructions: Read 13-2 Manipulating DNA pages 322-323. As you read each section, examine the figures and captions (explanations). Identify any questions you may have. 1) Develop an analogy for the processes researchers use to make changes to DNA. In yo analogy, explain how it is similar to the techniques used in genetic engineering. You can draw a graphic organizer, make a table, or write a few sentences describing your analogy. 2) Devise flowchart that shows the steps to prepare DNA for gel electrophoresis, as well the protocol for setting up and running a gel. You can add diagrams to the flowchart an add detailed notes if you like. English (inited Sate) O Focs ere to search 4 CO RU G\ L B. 2N A\ Alt Ciriarrow_forwardWorksheet-DNA 2D, synthesis and 3D With this non-graded worksheet, you will put in practice the knowledge you acquired on DNA structures and synthesis. We will go over the answers together in class and you will have plenty of opportunities to ask for clarifications The worksheet should take 60 to 90 minutes to complete and is based around: O Figure labeling O Fill in the blank questions O Multiple-choice questions H₂N N 2 N OMPIO HO-P-O- 1 6 Ο 5 OH N 4 3 7 3' carbon 5' carbon Nucleoside Glycosidic bond Phosphate group NH₂ NH₂ H. H₂C N N H 1 2 3 N H H Ο H Purine Pyrimidine Nucleobase 1 Nucleobase 2 Nucleotide Nucleobase Nucleobase 3 Nucleobase 4 4 NH NH₂arrow_forward
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- DNA EXTRACTION Materials: knife 1 cup of fruit Table salt clean piece of cloth or strainer for filtering resealable bag dishwashing liquid 70% rubbing alcohol (chilled) shot glass (or any transparent and narrow container resembling a test tube) How to do the extraction: Before you begin, make sure you have chilled your alcohol in the freezer for at least 3 hours. Room temperature alcohol will not work nearly as well as cold alcohol. Place about 50 mL of alcohol in the freezer to chill it and take it out only when you’re going to need it. (The alcohol will not actually freeze.) 1. The first thing you will need is a sample. Since DNA is found in all living…arrow_forwardDNa Mapping using Restriction enzymes lab: We will be aliquoting and delivering 5 μl of enzyme to each of the experimental tubes. What would happen if you underloaded the enzyme? i.e. you only delivered 3 or 4 μl ? What would see in your gel results?arrow_forwardCopy and paste the link below and watch the video on Youtube and Answer the Questionshttps://www.youtube.com/watch?v=g-dNJdOvBM4 Polymerase Chain Reaction Questions: 1. What are the materials used for the polymerase chain reaction? 2. Draw a schematic diagram of the procedure in PCR. 3. Why is it important to design the primers at the start of the laboratory procedure? 4. What are the components of the PCR buffer and what is its pH range? What is the purpose of the buffer? 5. What is the use for magnesium chloride? 6. How much template DNA is added? What is the concentration of the primers? 7. At what temperatures does denaturation, annealing and extension occur? Why are the processes placed in that temperature? 8. In this particular PCR experiment, how many cycles was used? 9. Can this PCR be used on its own to find out if a person has Covid or not on its own? Why or why not?arrow_forward
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Recommended textbooks for you
- Human Heredity: Principles and Issues (MindTap Co...BiologyISBN:9781305251052Author:Michael CummingsPublisher:Cengage Learning
Human Heredity: Principles and Issues (MindTap Co...
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