The structure of a metalloenzyme active site is down below(black picture). Describe, from a chemical and structural perspective, how the reactive site is designed to facilitate its catalytic reaction. The example below suggests the level of detail that is required. Make sure that you explain what the metal is doing, what the reaction is, and its biological significance.

Biochemistry
9th Edition
ISBN:9781319114671
Author:Lubert Stryer, Jeremy M. Berg, John L. Tymoczko, Gregory J. Gatto Jr.
Publisher:Lubert Stryer, Jeremy M. Berg, John L. Tymoczko, Gregory J. Gatto Jr.
Chapter1: Biochemistry: An Evolving Science
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The structure of a metalloenzyme active site is down below(black picture). Describe, from a chemical and structural perspective, how the reactive site is designed to facilitate its catalytic reaction. The example below suggests the level of detail that is required. Make sure that you explain what the metal is doing, what the reaction is, and its biological significance. 

A
B
172
spmoB
265
spmoBd2
spmoBd1
See this image and copyright information in PMC
Figure 1 Overall architecture of pMMO. (A) Structure of Methylocystis sp. strain M pMMO
protomer (PDB accession code 3RGR). The pmoB, pmoA, and pmoC subunits are shown in
blue, magenta, and green, respectively. The N- and C-termini of pmoB are labeled. An
exogenous helix is shown in yellow. Copper ions are shown as cyan spheres and a zinc ion is
shown as a gray sphere. Ligands are shown as ball-and-stick representations. (B) Structure of
M. capsulatus (Bath) pMMO protomer (PDB accession code 3RGB). The amino terminal
domain of pmoB (spmoBd1) is shown in blue, the carboxy terminal domain of pmoB is shown
in gray (spmoBd2), and the two transmembrane helices are shown in transparent blue. In the
recombinant spmoB protein, spmoBd1 and spmoBd2 are linked by a GKLGGG sequence
connecting residues 172 and 265 (labeled). The pmoA and pmoC subunits are shown in
transparent magenta and transparent green, respectively. A hydrophilic patch of residues
proposed to house a tricopper active site is denoted with an asterisk. The mononuclear
copper site at the interface of the two spmoB domains is not present in the Methylocystis sp.
strain M pMMO structure. [A color version of this figure is available online.]
Transcribed Image Text:A B 172 spmoB 265 spmoBd2 spmoBd1 See this image and copyright information in PMC Figure 1 Overall architecture of pMMO. (A) Structure of Methylocystis sp. strain M pMMO protomer (PDB accession code 3RGR). The pmoB, pmoA, and pmoC subunits are shown in blue, magenta, and green, respectively. The N- and C-termini of pmoB are labeled. An exogenous helix is shown in yellow. Copper ions are shown as cyan spheres and a zinc ion is shown as a gray sphere. Ligands are shown as ball-and-stick representations. (B) Structure of M. capsulatus (Bath) pMMO protomer (PDB accession code 3RGB). The amino terminal domain of pmoB (spmoBd1) is shown in blue, the carboxy terminal domain of pmoB is shown in gray (spmoBd2), and the two transmembrane helices are shown in transparent blue. In the recombinant spmoB protein, spmoBd1 and spmoBd2 are linked by a GKLGGG sequence connecting residues 172 and 265 (labeled). The pmoA and pmoC subunits are shown in transparent magenta and transparent green, respectively. A hydrophilic patch of residues proposed to house a tricopper active site is denoted with an asterisk. The mononuclear copper site at the interface of the two spmoB domains is not present in the Methylocystis sp. strain M pMMO structure. [A color version of this figure is available online.]
Architecture and active site of particulate methane
monooxygenase
Megen A Culpepper 1, Amy C Rosenzweig
Affiliations expand
PMID: 22725967 PMCID: PMC3474877 DOI: 10.3109/10409238.2012.697865
Free PMC article
Abstract
Particulate methane monooxygenase (pMMO) is an integral membrane metalloenzyme that
oxidizes methane to methanol in methanotrophic bacteria, organisms that live on methane gas as
their sole carbon source. Understanding pMMO function has important implications for
bioremediation applications and for the development of new, environmentally friendly catalysts for
the direct conversion of methane to methanol. Crystal structures of pMMOs from three different
methanotrophs reveal a trimeric architecture, consisting of three copies each of the pmoB, pmoA,
and pmoC subunits. There are three distinct metal centers in each protomer of the trimer,
mononuclear and dinuclear copper sites in the periplasmic regions of pmoB and a mononuclear site
within the membrane that can be occupied by copper or zinc. Various models for the pMMO active
site have been proposed within these structural constraints, including dicopper, tricopper, and
diiron centers. Biochemical and spectroscopic data on pMMO and recombinant soluble fragments,
denoted spmoB proteins, indicate that the active site involves copper and is located at the site of
the dicopper center in the pmoB subunit. Initial spectroscopic evidence for O(2) binding at this site
has been obtained. Despite these findings, questions remain about the active site identity and
nuclearity and will be the focus of future studies.
Figures
Figure 1 Overall
architecture of pMMO.
(A)...
MMO
проп
TO
Figure 4 Optical
spectrum of detergent-
solubilized pMMO...
न्छु ९०द्र प्रबुद्ध
3337
Figure 2 Metal centers
modeled in the...
Figure 3 Multiple
sequence alignments of
representative...
Transcribed Image Text:Architecture and active site of particulate methane monooxygenase Megen A Culpepper 1, Amy C Rosenzweig Affiliations expand PMID: 22725967 PMCID: PMC3474877 DOI: 10.3109/10409238.2012.697865 Free PMC article Abstract Particulate methane monooxygenase (pMMO) is an integral membrane metalloenzyme that oxidizes methane to methanol in methanotrophic bacteria, organisms that live on methane gas as their sole carbon source. Understanding pMMO function has important implications for bioremediation applications and for the development of new, environmentally friendly catalysts for the direct conversion of methane to methanol. Crystal structures of pMMOs from three different methanotrophs reveal a trimeric architecture, consisting of three copies each of the pmoB, pmoA, and pmoC subunits. There are three distinct metal centers in each protomer of the trimer, mononuclear and dinuclear copper sites in the periplasmic regions of pmoB and a mononuclear site within the membrane that can be occupied by copper or zinc. Various models for the pMMO active site have been proposed within these structural constraints, including dicopper, tricopper, and diiron centers. Biochemical and spectroscopic data on pMMO and recombinant soluble fragments, denoted spmoB proteins, indicate that the active site involves copper and is located at the site of the dicopper center in the pmoB subunit. Initial spectroscopic evidence for O(2) binding at this site has been obtained. Despite these findings, questions remain about the active site identity and nuclearity and will be the focus of future studies. Figures Figure 1 Overall architecture of pMMO. (A)... MMO проп TO Figure 4 Optical spectrum of detergent- solubilized pMMO... न्छु ९०द्र प्रबुद्ध 3337 Figure 2 Metal centers modeled in the... Figure 3 Multiple sequence alignments of representative...
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