ND STONY BROOK UNIVERSITY LOOSELEAF GENETICS: FROM GENES TO GENOMES
ND STONY BROOK UNIVERSITY LOOSELEAF GENETICS: FROM GENES TO GENOMES
6th Edition
ISBN: 9781260406092
Author: HARTWELL, Leland, HOOD, Leroy, Goldberg, Michael
Publisher: Mcgraw-hill Education/stony Brook University
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Chapter 12, Problem 37P

The completely synthetic yeast chromosome Syn III contains a loxP site in the 3′ UTR of every gene that is potentially nonessential to yeast survival. As you will recall from Chapter 6, loxP sites are targets of site-specific recombination. The researchers who constructed Syn III included these loxP sites as a way to “scramble” the chromosome, meaning that parts of the chromosome could easily be deleted or rearranged. The goal of these investigations is to drive the evolution of Syn III so as to define a minimal genome that can support the life of this organism. Outline the experiment the researchers would do to scramble Syn III in order to define a minimal genome.

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What percentage of the DNA sites in yeast are accessible, assuming that the fraction of sites observed for GAL4 is typical? To how many base pairs of the 12-Mb yeast genome does this percentage correspond?
You are interested in studying resistance to heavy metals and have selected the yeast Saccharomyces cerevisea to conduct your studies. You have recovered a deletion mutant that does not tolerate high concentrations of zinc (grows poorly in zinc containing media ) and have designated the mutant pgz-1 (for poor growth in zinc ). (a) What is the advantage to the type of mutant used in this work? What class of mutagen was likely use to generate pgz-1? ( b) Do you expect the PGZ gene to be expressed in your mutant? Explain.
12) Draw a yeast knockout cassette. Label all required sequence features.  a) Draw the target chromosome if recombination only occurs at one region of homology.  b) Draw the target chromosome if recombination occurs using both regions of homology.

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ND STONY BROOK UNIVERSITY LOOSELEAF GENETICS: FROM GENES TO GENOMES

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Genome Annotation, Sequence Conventions and Reading Frames; Author: Loren Launen;https://www.youtube.com/watch?v=MWvYgGyqVys;License: Standard Youtube License