Genetic Analysis: An Integrated Approach (3rd Edition)
3rd Edition
ISBN: 9780134605173
Author: Mark F. Sanders, John L. Bowman
Publisher: PEARSON
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Textbook Question
Chapter 16, Problem 18P
When the human genome is examined, the chromosomes appear to have undergone only minimal rearrangement in the
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The human genome contains more than a million copies of the Alu transposable element. Comparative genomics reveals that the Alu element is found only in the clade of mammals that includes primates, tree shrews,rodents, and rabbits. a. What does the observation that the Alu transposon is limited to this clade reveal about its origin and method of spread among species? b. At many sites in the genome, an Alu element is present in humans but absent in chimpanzees, while at many other sites an Alu element is present in chimpanzees but absent in humans. What are two hypotheses that could explain this situation? For any particular site,how could the hypotheses be distinguished?
how can genomes with a relatively small number of genes produce the vast complexity of phenotypes that results in living organisms, including humans?
Although DNA transposons are abundant in the genomes of multicellular eukaryotes, class 1 elements usually make up the largest fraction of very large genomes such as those from humans (~2500 Mb), maize (~2500 Mb), and barley (~5000 Mb). Given what you know about class 1 and class 2 elements, what is it about their distinct mechanisms of transposition that would account for this consistent difference in abundance?
Chapter 16 Solutions
Genetic Analysis: An Integrated Approach (3rd Edition)
Ch. 16 - You have discovered a new species of Archaea from...Ch. 16 - 16.2 Repetitive DNA poses problems for genome...Ch. 16 - 16.3 When the whole-genome shotgun sequence of the...Ch. 16 - How do cDNA sequences facilitate gene annotation?...Ch. 16 - 16.5 How do comparisons between genomes of related...Ch. 16 - 16.6 You are designing algorithms for the...Ch. 16 - 16.7 You have sequenced a region of the Bacillus...Ch. 16 - You have just obtained 100-kb of genomic sequence...Ch. 16 - 16.9 The human genome contains a large number of...Ch. 16 - Based on the tree of life in Figure 16.12, would...
Ch. 16 - 16.11 When comparing genes from two sequenced...Ch. 16 - 16.12 What is a reference genome? How can it be...Ch. 16 - Prob. 13PCh. 16 - Prob. 14PCh. 16 - 16.16 Consider the phylogenetic tree below with...Ch. 16 - You have isolated a gene that is important for the...Ch. 16 - 16.18 When the human genome is examined, the...Ch. 16 - Symbiodinium minutum is a dinoflagellate with a...Ch. 16 - Substantial fractions of the genomes of many...Ch. 16 - 16.21 A modification of the system, called the ...Ch. 16 - 16.22 A substantial fraction of almost every...Ch. 16 - 16.23 In the globin gene family shown in Figure ,...Ch. 16 - You are studying similarities and differences in...Ch. 16 - In conducting the study described in Problem 24,...Ch. 16 - Prob. 26PCh. 16 - Prob. 27PCh. 16 - Prob. 28PCh. 16 - Prob. 29P
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- When the human genome sequence was finally completed, scientists were surprised to discover that the genome contains far fewer genes than expected. How many genes are present in the human genome? Scientists have also found that there are many more different kinds of proteins in human cells than there are different genes in the genome. How can this be explained?arrow_forwardMobile genetic elements, such as the Alu sequences, are found in many copies in human DNA. In what ways could the presence of an Alu sequence affect a nearby gene?arrow_forwardan orginal dna sequence retrieved from the gametes of a female golden retriever and a mutated dna sequence fro her puppy are found below. how will this mutation effect descentants of this puppyarrow_forward
- whose descendant sequences are found in all people now on the earth?arrow_forwardIf you compare the frequency of the sixteen possible dinucleotide sequences in the E. coli and human genomes, there are no striking differences except for one dinucleotide, 5ʹ-CG-3ʹ. The frequency of CG dinucleotides in the human genome is significantly lower than in E. coli and significantly lower than expected by chance. Why do you suppose that CG dinucleotides are underrepresented in the human genome? (hint: The C in the CG pair is often methylated). Explain how this observation has an impact on the cells immune response.arrow_forwardYou sample DNA from seven bighorn sheep from a population of 2,000 in the Rocky Mountains of Colorado. You sequence 10,000 basepairs from an intron in a diploid coat color locus. You think the SNP mutation rate is somewhere around 10-3 per generation for the whole locus. How many SNPs do you expect to find?arrow_forward
- What proportion of exons are repeated sequences in the human genome? Is 38% surprising?arrow_forwardOn the basis of current knowledge, the protein-encoding regions account for only about 3% of the human genome. What is the function of the rest of the DNA?arrow_forwardAlthough DNA transposons are abundant in the genomes of multicellular eukaryotes, class 1 elements usually make up the largest fraction of very large genomessuch as those from humans (~2500 Mb), maize (~2500Mb), and barley (~5000 Mb). Given what you knowabout class 1 and class 2 elements, what is it about theirdistinct mechanisms of transposition that would accountfor this consistent difference in abundance?arrow_forward
- Geneticists are currently considering using technologies described in this chapter to de-extinct thewoolly mammoth, a species that disappearedroughly 4000 years ago.a. Frozen specimens of woolly mammoths have beenfound in the Siberian tundra. If intact, living cellscould be obtained from these samples, how couldyou attempt to bring back these long-extinct animals using these cells and oocytes from Asian elephants, a closely related species? b. Scientists have determined the genome sequence ofthe mammoth from frozen samples. These researchers are now trying to understand the adaptations that allowed these creatures to surviveextreme cold. For example, mammoths had muchthicker hair than do any elephants. How in theorycould you use CRISPR/Cas9 to investigate thegenetic basis of the difference in hair thicknessbetween mammoths and elephants?c. How (again in theory) might it be possible to extend the CRISPR/Cas9 technique to de-extinct themammoth? What kinds of technical challenges…arrow_forwardAssuming human cells have on average 1000 mitochondria, what percentage by weight of the total DNAisolated from human tissue would be mtDNA?arrow_forwardThe period gene of Drosophila melanogaster encodes for a stretch of Thr-Gly repeated in tandem. In natural populations, the three most common alleles encode for 17, 20 and 23 Thr-Gly repeats. The amplification by PCR of the allele encoding for 20 Thr-Gly repeats produces a fragment of 320 bp. Using the same set of primers, what is the size expected when amplifying the 17 Thr-Gly allele? 317 303 314 302 In a certain species of plant loci A, B and C have an additive effect on the colour of the flower. Alleles A, B, and C are dominant and alleles a, b and c are recessive. Knowing that a plant with genotype AAbbCc has a pink flower, which genotype, among the ones listed below, will produce the same phenotype? Aabbcc. aabbcc. AaBbCc. AABBCc. In pea plants, tall (T) is dominant to dwarf (t) and yellow (Y) is dominant to green (y). In a cross of true-breeding tall yellow peas x dwarf green…arrow_forward
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